Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_G05
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    27   2.5  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    27   2.5  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    27   3.3  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.3  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   3.3  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   5.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.8  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   7.7  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   7.7  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      25   7.7  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   7.7  

>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 573 LSPYL*SPRLYIMGTLIVLSLLTXKSRSLVSRSS 674
           L   L SP LY+   ++   L T  SRSLV+RS+
Sbjct: 73  LDGLLYSPVLYLFSYILPSKLFTIFSRSLVNRSA 106


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/56 (23%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
 Frame = -2

Query: 592 DYKYGESAVLNAQLIE-IPYKGDQSSLIVVLPKDKDGITQLQEALKDPKTLETAQQ 428
           + ++G +A++++ LIE +  + +++ +I + P+D +   Q+Q   +  + L+ AQ+
Sbjct: 660 EQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQR 715


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 158 YKRLTYNCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTY 274
           Y   T N TH+  G  +  S F+A    +  RFLNS  Y
Sbjct: 175 YTAYTTNVTHRGIGFSLIFSPFAALTRLYLARFLNSPQY 213


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 158 YKRLTYNCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTY 274
           Y   T N TH+  G  +  S F+A    +  RFLNS  Y
Sbjct: 175 YTAYTTNVTHRGIGFSLIFSPFAALTRLYLARFLNSPQY 213


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = -2

Query: 499 KDKDGITQLQEALKDPKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMNVNKIF 323
           K +   +Q    LK   T  T   S+ ST  D++ LP+  ++++TN K    N+N++ + 
Sbjct: 774 KTRHDSSQSARQLKARSTATTISISL-STVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLS 832

Query: 322 N---NDAQITRLLK 290
           +   N   + +L+K
Sbjct: 833 SSTCNANSVNKLMK 846


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 99  TEFSTLRY*LFQQRIIQRITR 37
           TEFST+ + L  QRII R+T+
Sbjct: 569 TEFSTVSHSLIFQRIIYRLTQ 589


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
 Frame = -2

Query: 631  DKTIKVPMMYKRGDYKYGESAVLNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQEALKD- 455
            D   K+   +   + K  E   +N +L  +  K  +SSL V +  +   +TQL E  K+ 
Sbjct: 836  DNVQKLMHKHVNQESKVSELKEVNGKL-SLDLKNLRSSLNVAISDNDQILTQLAELSKNY 894

Query: 454  -------------PKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNND 314
                          K+LE  +Q +++   +L++   K+  +  +++  S+    K+    
Sbjct: 895  DSLEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQ 954

Query: 313  AQITRLLKGESLSVSEAI 260
             +I+  LK E++S S+AI
Sbjct: 955  EEISN-LKEENMSQSQAI 971


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = -2

Query: 583 YGESAVLNAQLIEIPYKGDQSSLIVVLPKDK-DGITQLQEALKDPKTLETAQQSMYSTEV 407
           Y ES +       + Y+G+ +++++  PKD  D  T  +E+ K+        + +   ++
Sbjct: 560 YLESQISTELFANLRYEGNDTTMMIAKPKDSWDFKTLFEESYKNQFGFSLIDRKIMVEDI 619

Query: 406 DL-YLPKFKIETETNLKDVLSNMNVNKIFNNDAQIT 302
            +  + +   ++E +        N N +F  D + T
Sbjct: 620 RIRAIARASNQSEVDTVFASETENENTVFIRDNKPT 655


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 167 LTYNCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTYRKAFSF 292
           +T     K + +G   ++  +F+ D N+ F+N+ TY    SF
Sbjct: 190 MTIKMLEKRFKKG-EYTTLESFVKDLNQMFINAKTYNAPGSF 230


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 453 LRRWKRLSKACIAPKSICIFPNSKLKRRRISKMF 352
           LRR++R+S A   PK+     NS ++ R+   MF
Sbjct: 27  LRRFRRISNASTIPKN--YLNNSTVENRKYKTMF 58


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 346 NMNVNKIFNNDAQITRLLKGESLSVS 269
           +++ NKI N    +TR LKG +LS++
Sbjct: 847 SVSENKILNRSFSLTRSLKGLALSLA 872


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,270
Number of Sequences: 5004
Number of extensions: 45673
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)