Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_G05
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   4.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.2  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 161 CIQSEPSLRILPKRRRCH 108
           C++  P + I P+RR+ H
Sbjct: 32  CVRVSPVITIEPRRRKFH 49


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 5   INTCYWVFY 31
           +N CYWV Y
Sbjct: 483 LNICYWVIY 491


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 158 IQSEPSLRILPKRRRCHSF*RSF 90
           I+  PS+ +LP+   CH+   SF
Sbjct: 645 IRKMPSMPLLPRPISCHTTPDSF 667


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 173 YNCTHKYYGEGVSCSSFSAFLVDFNER 253
           +N T KYY  G +      F+ D N +
Sbjct: 297 FNLTIKYYKSGSTVPFNFMFIADLNNQ 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,451
Number of Sequences: 438
Number of extensions: 3258
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)