Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_G04
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79694-8|CAB01965.1|  872|Caenorhabditis elegans Hypothetical pr...    36   0.017
Z72506-9|CAA96622.1|  872|Caenorhabditis elegans Hypothetical pr...    36   0.017
X08068-1|CAA30857.1|  882|Caenorhabditis elegans paramyosin prot...    35   0.039
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,...    27   7.9  
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,...    27   7.9  
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,...    27   7.9  
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,...    27   7.9  
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,...    27   7.9  
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip...    27   7.9  
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip...    27   7.9  
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip...    27   7.9  
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip...    27   7.9  

>Z79694-8|CAB01965.1|  872|Caenorhabditis elegans Hypothetical
           protein F07A5.7 protein.
          Length = 872

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 18/37 (48%), Positives = 26/37 (70%)
 Frame = -3

Query: 602 EDRADVAESNLSLIRAKHRTFVTTSTVPGSQVYLVQE 492
           E RAD AES+L LIRAKHR+ V T     S++++ ++
Sbjct: 835 EGRADQAESSLHLIRAKHRSSVVTGK-SSSKIFVTED 870


>Z72506-9|CAA96622.1|  872|Caenorhabditis elegans Hypothetical
           protein F07A5.7 protein.
          Length = 872

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 18/37 (48%), Positives = 26/37 (70%)
 Frame = -3

Query: 602 EDRADVAESNLSLIRAKHRTFVTTSTVPGSQVYLVQE 492
           E RAD AES+L LIRAKHR+ V T     S++++ ++
Sbjct: 835 EGRADQAESSLHLIRAKHRSSVVTGK-SSSKIFVTED 870


>X08068-1|CAA30857.1|  882|Caenorhabditis elegans paramyosin
           protein.
          Length = 882

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = -3

Query: 602 EDRADVAESNLSLIRAKHRTFVTT 531
           E RAD AES+L LIRAKHR+ V T
Sbjct: 851 EGRADQAESSLHLIRAKHRSSVVT 874


>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
            1,4,5-trisphosphate receptorprotein.
          Length = 2857

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 298  PERIVAPSINTFNHLTND*AYTRPELRPLID 390
            P+++  PSI+  + L+ND  ++ P+L P  D
Sbjct: 1994 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2024


>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
            1,4,5-trisphosphate receptorprotein.
          Length = 2836

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 298  PERIVAPSINTFNHLTND*AYTRPELRPLID 390
            P+++  PSI+  + L+ND  ++ P+L P  D
Sbjct: 1973 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2003


>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
            1,4,5-trisphosphate receptorprotein.
          Length = 2892

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 298  PERIVAPSINTFNHLTND*AYTRPELRPLID 390
            P+++  PSI+  + L+ND  ++ P+L P  D
Sbjct: 2029 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2059


>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
            1,4,5-trisphosphate receptorprotein.
          Length = 2846

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 298  PERIVAPSINTFNHLTND*AYTRPELRPLID 390
            P+++  PSI+  + L+ND  ++ P+L P  D
Sbjct: 1983 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2013


>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
            1,4,5-trisphosphate receptorprotein.
          Length = 2846

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 298  PERIVAPSINTFNHLTND*AYTRPELRPLID 390
            P+++  PSI+  + L+ND  ++ P+L P  D
Sbjct: 1983 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2013


>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
            triphosphate receptorprotein 1, isoform e protein.
          Length = 2857

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 298  PERIVAPSINTFNHLTND*AYTRPELRPLID 390
            P+++  PSI+  + L+ND  ++ P+L P  D
Sbjct: 1994 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2024


>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
            triphosphate receptorprotein 1, isoform f protein.
          Length = 2846

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 298  PERIVAPSINTFNHLTND*AYTRPELRPLID 390
            P+++  PSI+  + L+ND  ++ P+L P  D
Sbjct: 1983 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2013


>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
            triphosphate receptorprotein 1, isoform d protein.
          Length = 2836

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 298  PERIVAPSINTFNHLTND*AYTRPELRPLID 390
            P+++  PSI+  + L+ND  ++ P+L P  D
Sbjct: 1973 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2003


>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
            triphosphate receptorprotein 1, isoform a protein.
          Length = 2892

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 298  PERIVAPSINTFNHLTND*AYTRPELRPLID 390
            P+++  PSI+  + L+ND  ++ P+L P  D
Sbjct: 2029 PQQVRHPSISEMSQLSNDLTHSIPDLAPYQD 2059


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,282,784
Number of Sequences: 27780
Number of extensions: 228961
Number of successful extensions: 601
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)