Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_G02
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical pr...    31   0.63 
U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical pr...    31   0.63 
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen...    29   3.4  
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen...    29   3.4  
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ...    29   3.4  
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ...    29   3.4  
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll...    29   3.4  
J05066-1|AAA27989.1|  261|Caenorhabditis elegans alpha-2 (IV) co...    29   3.4  

>U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical
           protein B0563.6b protein.
          Length = 417

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 471 LTNHNSETILFSTKSKFVIKN*LPYFNCFP*QYLNKDGIFSLIRKKQQYPIQK 629
           +TNH S+  +F   S       L  F CF   Y N+D + S +R+ Q   IQK
Sbjct: 291 ITNHASQFYVFCACSTDYRTTFLQKFPCFKTDYANRDRLRSFVRRTQSV-IQK 342


>U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical
           protein B0563.6a protein.
          Length = 434

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 471 LTNHNSETILFSTKSKFVIKN*LPYFNCFP*QYLNKDGIFSLIRKKQQYPIQK 629
           +TNH S+  +F   S       L  F CF   Y N+D + S +R+ Q   IQK
Sbjct: 300 ITNHASQFYVFCACSTDYRTTFLQKFPCFKTDYANRDRLRSFVRRTQSV-IQK 351


>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
            protein.
          Length = 1759

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 721  GQLLXRVSRCAVCIKNTT*SH 659
            G L  RVSRC VC+K+T   H
Sbjct: 1739 GNLRTRVSRCQVCVKSTDGRH 1759


>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
            protein.
          Length = 1758

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 721  GQLLXRVSRCAVCIKNTT*SH 659
            G L  RVSRC VC+K+T   H
Sbjct: 1738 GNLRTRVSRCQVCVKSTDGRH 1758


>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
            isoform a protein.
          Length = 1758

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 721  GQLLXRVSRCAVCIKNTT*SH 659
            G L  RVSRC VC+K+T   H
Sbjct: 1738 GNLRTRVSRCQVCVKSTDGRH 1758


>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
            isoform b protein.
          Length = 1759

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 721  GQLLXRVSRCAVCIKNTT*SH 659
            G L  RVSRC VC+K+T   H
Sbjct: 1739 GNLRTRVSRCQVCVKSTDGRH 1759


>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
            protein.
          Length = 1795

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 721  GQLLXRVSRCAVCIKNTT*SH 659
            G L  RVSRC VC+K+T   H
Sbjct: 1775 GNLRTRVSRCQVCVKSTDGRH 1795


>J05066-1|AAA27989.1|  261|Caenorhabditis elegans alpha-2 (IV)
           collagen protein.
          Length = 261

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 721 GQLLXRVSRCAVCIKNTT*SH 659
           G L  RVSRC VC+K+T   H
Sbjct: 241 GNLRTRVSRCQVCVKSTDGRH 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,768,088
Number of Sequences: 27780
Number of extensions: 305623
Number of successful extensions: 602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)