Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F21
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    27   1.8  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   4.2  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    25   7.4  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   7.4  

>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -2

Query: 638 IVIPLSIHFKFQIIATNQYIYLKNTTSIYKIELCIKHLP*KRLELKVELMKSASYSLL 465
           + I + I+F  + ++     ++KN  S+ +I   I HLP   ++LK+    SA  ++L
Sbjct: 210 LAIDMVINFIRRTLSIQSETHVKNIDSLQQIVPTIPHLPLNLVQLKITPEISAIRTIL 267


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 13  IFTSSYNDQLCPYWCEFTCLLI 78
           IFT  Y D  CP W     LLI
Sbjct: 548 IFTVRYYDTQCPVWALIVALLI 569


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 385 TVNYTMMDTWCVLALMLNYYCK 450
           TV+YT+ + + VL L++ Y C+
Sbjct: 330 TVSYTVCECYEVLGLLIRYLCE 351


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/33 (24%), Positives = 22/33 (66%)
 Frame = +1

Query: 370 YKSTQTVNYTMMDTWCVLALMLNYYCKLAVKYN 468
           Y+ T  ++ +++D+W  +A+++  +  L V+Y+
Sbjct: 229 YQYTNMLSASLLDSWATVAVVILSFIFLKVRYH 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,674
Number of Sequences: 5004
Number of extensions: 62346
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)