Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F21
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0670 + 16819189-16819481,16821687-16821803,16822073-168221...    29   2.5  
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    29   3.3  
11_01_0623 - 4998236-4999606                                           29   4.4  

>05_03_0670 +
           16819189-16819481,16821687-16821803,16822073-16822136,
           16822566-16822724,16823014-16823165,16825137-16825272
          Length = 306

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 662 HRKISGTVIVIPLSIHFKFQIIATNQYIY-LKNTTSIY 552
           +R + G   V PL++ F+  ++AT  Y Y L++T + Y
Sbjct: 80  YRNLVGAAAVAPLAVLFERVLLATGMYYYGLRDTNAAY 117


>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
            3611984-3612217,3614113-3614138,3614446-3614633,
            3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 197  CNLYVVSFGMCCRVLGPVPCLLPVRSINGIR*EFYSAKHRIRRQVNSHQ 51
            C L V++ G+CC    P+P L    SI+    +F +  ++   + + H+
Sbjct: 969  CLLSVLNIGLCCTKSSPIPILTACSSIDSSGNDFKALVYQFMPRGDLHK 1017


>11_01_0623 - 4998236-4999606
          Length = 456

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -1

Query: 621 DTFQIPNNSYESIYLLKEYYIYLQD*ALYKTSTMKAARTESGTNEKRKLFIIIFYSQ 451
           D  +IP++ YE +Y  +   ++      YKTST  AAR  S + E  K  ++   SQ
Sbjct: 350 DDIEIPSHGYELMYKNQGNKLH------YKTSTATAARKRSSSTEVTKGKVLEHLSQ 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,595,981
Number of Sequences: 37544
Number of extensions: 330257
Number of successful extensions: 582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)