Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F21
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-6|AAA83169.1|  256|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.9  
M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U53336-2|AAA96175.1|  571|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U41023-3|AAA82342.2|  435|Caenorhabditis elegans Arrestin family...    27   9.1  

>U41533-6|AAA83169.1|  256|Caenorhabditis elegans Hypothetical
           protein R05F9.9 protein.
          Length = 256

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 72  PNPMFCRIKFLSNAINAPYG 131
           PNP++CR+  ++N    P+G
Sbjct: 147 PNPVYCRVSLMANKFTFPFG 166


>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 458 TANLQ**LSIKARTHQVSIIV*FTVCVLLYIFVCF 354
           TA L     ++A    + ++  FT+C L+++F CF
Sbjct: 223 TATLSNRYQLEANMRNIRLLQSFTLCDLIFVFTCF 257


>M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical
           protein B0303.11 protein.
          Length = 903

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 418 VLALMLNYYCKLAVKYNNE*LALFISSTFSSS 513
           +L+L ++  C +A  Y N  LALFI+S F+ S
Sbjct: 401 LLSLAISAACFIASLYTNRHLALFIASIFAIS 432


>U53336-2|AAA96175.1|  571|Caenorhabditis elegans Hypothetical
           protein K07C11.4 protein.
          Length = 571

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +3

Query: 63  YLSPNPMFCRIKFLSNAINAPYG*QARYGSKHSTTHSK*HYIKVTNYGSNRTKLFHFSK 239
           Y   +P FC  K     +  PYG    +  K + T SK H      YG+    ++ F K
Sbjct: 10  YFLVSPAFCVSK---PKVTTPYGPIVGFEHKSTVTGSKYHVFLGIRYGNPPDHIYRFQK 65


>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
           protein F38E11.5 protein.
          Length = 1000

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 358 HTNIYKSTQTVNYTMMDTWCVLA 426
           H N Y+   T+NY +   WC+ A
Sbjct: 257 HANTYRLETTLNYGLERVWCIQA 279


>U41023-3|AAA82342.2|  435|Caenorhabditis elegans Arrestin family
           protein 1 protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -1

Query: 654 DKRYCYCHSSIDT-FQIPNNSYESIYLLKEYYIYLQD*ALYKTS--TMKAARTES 499
           DK   Y   SI     I NNS +++  LK Y I + D  L+ T+  + + AR ES
Sbjct: 216 DKEMYYHGESISVNVHIQNNSNKTVKKLKIYIIQVADICLFTTASYSCEVARIES 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,026
Number of Sequences: 27780
Number of extensions: 351284
Number of successful extensions: 843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)