Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F21
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   4.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.6  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           22   6.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 30  QRSIMSILV*IYLSPNPMFCRIKFL 104
           Q ++ + LV + L  NP  CR KFL
Sbjct: 909 QVTLNARLVELSLGSNPWSCRCKFL 933


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 22  SSYNDQLCPYWCEFTCL 72
           S +ND L   W  F CL
Sbjct: 111 SFFNDDLSTRWIAFNCL 127


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 22  SSYNDQLCPYWCEFTCL 72
           S +ND L   W  F CL
Sbjct: 111 SFFNDDLSTRWIAFNCL 127


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 22  SSYNDQLCPYWCEFTCL 72
           S +ND L   W  F CL
Sbjct: 111 SFFNDDLSTRWIAFNCL 127


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +3

Query: 180 HY-IKVTNYGSNRTKLFH 230
           HY ++  NY SN T +FH
Sbjct: 10  HYCLRWNNYQSNMTSVFH 27


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 599 IATNQYIYLKNTTSIYKIEL 540
           +A N+YIYL  T  + + +L
Sbjct: 63  LAGNRYIYLSGTDRVIRAKL 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,220
Number of Sequences: 438
Number of extensions: 4230
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)