Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_F18
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p... 72 9e-14
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 27 1.9
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 27 1.9
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.6
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 27 3.4
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 3.4
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 26 5.9
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 26 5.9
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 7.8
>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 71.7 bits (168), Expect = 9e-14
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Frame = -2
Query: 315 GLSVASAIAKVFPPSTVDIPSGWDVEKGPGEGRALK---PALLISLSAPKLCAKPEFLRN 145
G +A+ + +VD PS W++++GP + LK P LISL+APK C+K F +
Sbjct: 144 GSILAAIVESKIKVLSVDAPSSWEIDEGPQKEGPLKDFDPDTLISLTAPKPCSK--FYKG 201
Query: 144 TKHYLGGRFLPTDILKKYNLEIPQXPDQEQIV 49
KHYLGGRF+ I KK+NL +P P +Q+V
Sbjct: 202 -KHYLGGRFVSKVITKKFNLSLPPYPGIDQVV 232
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = -2
Query: 399 LNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPS 271
L+ S A ALD +L + FS+DQLMELAGLSV+ A+ + +PPS
Sbjct: 6 LSASAAKALDAELMSAGAFSIDQLMELAGLSVSQAVYREYPPS 48
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 411 VTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTVD 262
+++ LNQ L+ DL T YKF ++E + ++ + I S+VD
Sbjct: 55 LSKVLNQPNFRFLEMDLATNYKFLYQFMVEDSEINKITHIINFAAESSVD 104
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 156 FLRNTKHYLGGRFLPTDILKKYNLEIPQXP 67
F RN ++ FLP+D L+ NLEI P
Sbjct: 128 FERNARYSTSHLFLPSDFLQVNNLEIIHLP 157
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = -2
Query: 369 QDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTVDIPSGWDVEKGPGEGRALKPALLIS 190
Q++F E KF + +++ A S I K+ PP VDIP D E A +LI
Sbjct: 502 QNVFREEKFFMVRIVFRA-CSTVCLIDKL-PPKKVDIPFKSDFENALNGFVATFSEMLIQ 559
Query: 189 LSAPKLCAKPEFLRNTKHYLG 127
L A+ + + N + G
Sbjct: 560 TQCWHLSAQTQLVSNPLTFRG 580
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 321 LAGLSVASAIAKVFPPSTVDIPSGWDVEKGPGEGRALKPALLISLSAP 178
+AGLS A +A++ P T+D+ EKGP G L+ + +P
Sbjct: 10 IAGLSTAFYLARLIPKCTIDL-----YEKGPRLGGWLQSVKIPCADSP 52
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 455 YSFATRNIKALPNNLYNNIYRRF 523
YSF+T +I++ N++Y + +RF
Sbjct: 1643 YSFSTIDIQSFENSIYREVLQRF 1665
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 538 DRYFGSKCQFYLIKSYVRVTYVL 606
D+YFG+ C+ LI ++ + YV+
Sbjct: 93 DKYFGNVCELDLIFNFEKAYYVM 115
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 63 DQDXVEFLNYISSIYQLAEIFLPNNVWCSLRTL 161
DQD L ++ IY L + +L WCS +L
Sbjct: 1353 DQDLPNHLQHLIPIYSLPQDWLWCETWCSDESL 1385
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.4 bits (53), Expect = 7.8
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = -2
Query: 489 GSALILRVAKLYNIGTMTS-SVNQCNTVTRYLNQSEAA-ALDQDL--FTEYKFSVDQLME 322
G ++L+++K+ M ++N + R +E + +D ++ E V++ M
Sbjct: 638 GMRVLLKLSKILKQKRMDEGALNLASPEVRIQTDNETSDPMDVEIKQLLETNSLVEEFML 697
Query: 321 LAGLSVASAIAKVFPPSTV 265
LA +SVA I FP + V
Sbjct: 698 LANISVAQKIYDAFPQTAV 716
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,118
Number of Sequences: 5004
Number of extensions: 53874
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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