Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F18
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-3|CAA22319.1|  348|Caenorhabditis elegans Hypothetical ...    69   4e-12
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical...    29   2.4  
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical...    29   2.4  
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct...    29   2.4  
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct...    29   2.4  
Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AL034393-3|CAA22319.1|  348|Caenorhabditis elegans Hypothetical
           protein Y18D10A.3 protein.
          Length = 348

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
 Frame = -2

Query: 270 TVDIPSGWDVEKGPGEGR---ALKPALLISLSAPKLCAKPEFLRNTKHYLGGRFLPTDIL 100
           ++D+PSGWDVE G   G     + P  +ISL+ PKLC K        H+LGGRF+P  ++
Sbjct: 271 SIDVPSGWDVELGAPSGNDDDVIHPHSVISLTLPKLCMKNW---TGPHFLGGRFVPKSLV 327

Query: 99  KKYNLEIPQXPDQEQIVK 46
            ++ L +PQ P  EQIVK
Sbjct: 328 DEHELLMPQYPGFEQIVK 345



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 28/59 (47%), Positives = 37/59 (62%)
 Frame = -2

Query: 402 YLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTVDIPSGWDVEKGPG 226
           ++ Q  AA +D+ LFT+Y F V+QLMELAGL+ A AIA  +P S V +  G     G G
Sbjct: 125 FIGQKLAAQIDEQLFTKYGFKVEQLMELAGLAAAQAIAAHYPKSNVAVLCGPGNNGGDG 183


>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
           protein Y51A2D.19b protein.
          Length = 1118

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 156 FLRNTKHYLGGRFLPTDILKKYNLEIPQXP 67
           F RNTKH    R   TD+L+++  + P  P
Sbjct: 667 FRRNTKHSTAARARATDVLQQFQPQAPAGP 696


>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
           protein Y51A2D.19a protein.
          Length = 1140

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 156 FLRNTKHYLGGRFLPTDILKKYNLEIPQXP 67
           F RNTKH    R   TD+L+++  + P  P
Sbjct: 667 FRRNTKHSTAARARATDVLQQFQPQAPAGP 696


>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans
           large-conductance calcium-activatedpotassium channel
           SLO-1b protein.
          Length = 1118

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 156 FLRNTKHYLGGRFLPTDILKKYNLEIPQXP 67
           F RNTKH    R   TD+L+++  + P  P
Sbjct: 667 FRRNTKHSTAARARATDVLQQFQPQAPAGP 696


>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans
           large-conductance calcium-activatedpotassium channel
           SLO-1a protein.
          Length = 1140

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 156 FLRNTKHYLGGRFLPTDILKKYNLEIPQXP 67
           F RNTKH    R   TD+L+++  + P  P
Sbjct: 667 FRRNTKHSTAARARATDVLQQFQPQAPAGP 696


>Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical
           protein K02A4.1 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 57  VPDQDXVEFLNYISSIYQLAEIFLPNNVWCSL 152
           +PD D  E +N ++ + +L + ++PN+  CSL
Sbjct: 152 LPDFDSEEMINVLTELLRLDQEWVPNSDVCSL 183


>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
            protein F23B2.12 protein.
          Length = 1080

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 200  SAGFNALPSPGPFSTSQPLGISTVEGGKTLAMALATLRP 316
            ++G  +  SPG  STSQP+  +TV+       ++  L P
Sbjct: 1032 TSGTGSTASPGTGSTSQPVTATTVQATTKSTTSVTVLTP 1070


>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical protein
            F23B2.12 protein.
          Length = 1080

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 200  SAGFNALPSPGPFSTSQPLGISTVEGGKTLAMALATLRP 316
            ++G  +  SPG  STSQP+  +TV+       ++  L P
Sbjct: 1032 TSGTGSTASPGTGSTSQPVTATTVQATTKSTTSVTVLTP 1070


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,121,163
Number of Sequences: 27780
Number of extensions: 311729
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)