Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F17
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   2.3  
Z81560-3|CAB04548.2|  328|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    28   6.9  
U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.        28   6.9  
U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3...    28   6.9  

>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 360  YNECIEFVVLNNYFENKILQPI 295
            Y+EC+ F++   YF+NK L  I
Sbjct: 2007 YSECLVFIIATTYFDNKPLSTI 2028


>Z81560-3|CAB04548.2|  328|Caenorhabditis elegans Hypothetical
           protein K02E2.3 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 193 RFSYFNHIKTNIAPDTIYGHVYSSSICAVLACKSYR 300
           RF Y+N   TNIA  TI  H   S+I  ++    YR
Sbjct: 264 RFDYYNQAATNIALSTISCHGILSTITMLIFHTPYR 299


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 307 YFIFKVII*YHKFNTFIILIHNSNIFKYIIYTNKY 411
           + IFK+I  +H  N  ++    S  F Y+I++ KY
Sbjct: 278 FVIFKII--HHISNVLLVFYSASTFFIYLIFSEKY 310


>U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 600 SHLCKFQFHLNFALLQSNFNDS 535
           S LC F+F+L F +L+ + NDS
Sbjct: 306 SQLCVFEFNLFFQMLEQSCNDS 327


>U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3
           protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 600 SHLCKFQFHLNFALLQSNFNDS 535
           S LC F+F+L F +L+ + NDS
Sbjct: 306 SQLCVFEFNLFFQMLEQSCNDS 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,381,568
Number of Sequences: 27780
Number of extensions: 263417
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)