Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F17
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.5  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   3.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   3.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.1  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 364 IHNSNIFKYIIYTNKYPSN 420
           IHN+N +KY    N Y +N
Sbjct: 90  IHNNNNYKYNYNNNNYNNN 108


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 364 IHNSNIFKYIIYTNKYPSN 420
           IHN+N +KY    N Y +N
Sbjct: 90  IHNNNNYKYNYNNNNYNNN 108


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 364 IHNSNIFKYIIYTNKYPSN 420
           IHN+N +KY    N Y +N
Sbjct: 90  IHNNNNYKYNYNNNNYNNN 108


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 364 IHNSNIFKYIIYTNKYPSN 420
           IHN+N +KY    N Y +N
Sbjct: 90  IHNNNNYKYNYNNNNYNNN 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 364 IHNSNIFKYIIYTNKYPSN 420
           IHN+N +KY    N Y +N
Sbjct: 323 IHNNNNYKYNYNNNNYNNN 341


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 367 HNSNIFKYIIYTNKYPSNFHI*TKVVVHSKDRKYKI 474
           H  NIFK I  TN+  + + I   ++   K  K KI
Sbjct: 58  HIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKLKI 93


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 367 HNSNIFKYIIYTNKYPSNFHI*TKVVVHSKDRKYKI 474
           H  NIFK I  TN+  + + I   ++   K  K KI
Sbjct: 41  HIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKLKI 76


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 187 KTRFSYFNHIKTNIA 231
           + R  Y NH++ N+A
Sbjct: 429 RNRSEYLNHLRANVA 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,212
Number of Sequences: 438
Number of extensions: 3718
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)