Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F16
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.8  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   3.2  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   5.5  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    25   7.3  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   9.6  

>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = +1

Query: 181 SLMDREY*IKRNKNVKNVITSYLQNVFFKELETTDAAIMCFY----CVHTISTVLLF*LS 348
           S++   + +  N N   ++T  L N FF+      A  +  +    C H +++ L+F L 
Sbjct: 337 SIIINSHLLATNSNGMLLLTWLLDNSFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLI 396

Query: 349 KNSKN*YLQNILEKVLIKKSK 411
            N +    +N+L K L    K
Sbjct: 397 NNKQEPESRNLLLKNLFFSEK 417


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 262  RKRFASNWLLHFSHFCCVLSSILYPLMNISDDTYINIFVNSIKMLKL 122
            R+ F    LL F+  C  ++ I+ PL+     +Y   F NS+K  +L
Sbjct: 1763 RRTFYRYSLLFFALLCTFVAMIVVPLVLDQKLSYQFKFENSVKFFRL 1809


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 223 HFCCVLSSILYPLMNISDDTYINIFVNSIKMLKLNN*CRTLR 98
           +  C +S   + L++ SD   IN+F      LKL   CR LR
Sbjct: 141 YIVCRISKTSHMLIDFSDILQINVFKLGSTFLKL---CRVLR 179


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 27  NFTXFV-ISKLSSXANLQIIIYFLYL 101
           NF+  + I+KLS    + IIIYF Y+
Sbjct: 519 NFSVLLAIAKLSILGKVSIIIYFFYM 544


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 232 HFSHFCCVLSSILYPLMNISDDTYI 158
           HF + C +L  ++Y + N+  + Y+
Sbjct: 183 HFQYNCVMLGLVMYAIANLLKNQYV 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,009
Number of Sequences: 5004
Number of extensions: 35390
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)