Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_F16
(547 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC026301-3|AAK68898.2| 332|Caenorhabditis elegans Hypothetical ... 32 0.23
Z81503-4|CAB04110.2| 282|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain po... 28 5.0
Z83744-4|CAB06040.4| 735|Caenorhabditis elegans Hypothetical pr... 27 6.7
DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homo... 27 6.7
AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditi... 27 6.7
AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditi... 27 6.7
AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein. 27 6.7
U97008-5|AAB52311.2| 338|Caenorhabditis elegans Serpentine rece... 27 8.8
AC006655-1|AAF39875.1| 391|Caenorhabditis elegans Serpentine re... 27 8.8
>AC026301-3|AAK68898.2| 332|Caenorhabditis elegans Hypothetical
protein Y54F10BM.7 protein.
Length = 332
Score = 32.3 bits (70), Expect = 0.23
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = -1
Query: 256 RFASNWLLHFSHFCCVLSSILYPLMNISDDTYINIFVNSIKMLKLNN*CRTLRYKK 89
R S ++LHFSHF C +Y + N S +T + I N ++ + CR + +KK
Sbjct: 225 RLDSKFILHFSHFQCF---TIYKMFNFSTETAVEIRDNLMRKSEFQR-CR-IYFKK 275
>Z81503-4|CAB04110.2| 282|Caenorhabditis elegans Hypothetical
protein F14F7.4 protein.
Length = 282
Score = 28.3 bits (60), Expect = 3.8
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 246 VTGYYIFHIFVAFYLVFSI 190
+T Y +FH+++A+ LVF++
Sbjct: 57 ITAYLLFHLYLAYILVFAV 75
>Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical
protein F56H11.4 protein.
Length = 288
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 241 WLLHFSHFCCVLSSILYPLMNISDDTYINIFVN 143
+L+HF++ C ++ L D TY+ +FVN
Sbjct: 232 YLMHFTNANCDFEPSVFKLAVFMDTTYLALFVN 264
>AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain
polyunsaturated fattyacid elongation enzyme protein.
Length = 288
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 241 WLLHFSHFCCVLSSILYPLMNISDDTYINIFVN 143
+L+HF++ C ++ L D TY+ +FVN
Sbjct: 232 YLMHFTNANCDFEPSVFKLAVFMDTTYLALFVN 264
>Z83744-4|CAB06040.4| 735|Caenorhabditis elegans Hypothetical
protein C06A12.4 protein.
Length = 735
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 241 WLLHFSHFCCVLSSILYPL-MNISDDTYINIFVNSIKMLKLNN*CRTLRYKKY 86
W ++ F C++++ILY + +++S DT +F+ +M KL R Y Y
Sbjct: 84 WCSNYIFFPCLMNAILYIISLSLSRDTTFILFI-FYQMNKLITVIRDFSYSVY 135
>DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homolog
protein.
Length = 578
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 247 SNWLLHFSHFCCVLSSILYPLMNISDDTY 161
SNW+ +S CCVL+S + I D +
Sbjct: 234 SNWMAFWSITCCVLASFTFLTFLIETDRF 262
>AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform a protein.
Length = 578
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 247 SNWLLHFSHFCCVLSSILYPLMNISDDTY 161
SNW+ +S CCVL+S + I D +
Sbjct: 234 SNWMAFWSITCCVLASFTFLTFLIETDRF 262
>AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform b protein.
Length = 550
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 247 SNWLLHFSHFCCVLSSILYPLMNISDDTY 161
SNW+ +S CCVL+S + I D +
Sbjct: 234 SNWMAFWSITCCVLASFTFLTFLIETDRF 262
>AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein.
Length = 550
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 247 SNWLLHFSHFCCVLSSILYPLMNISDDTY 161
SNW+ +S CCVL+S + I D +
Sbjct: 234 SNWMAFWSITCCVLASFTFLTFLIETDRF 262
>U97008-5|AAB52311.2| 338|Caenorhabditis elegans Serpentine
receptor, class h protein231 protein.
Length = 338
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 72 LQIIIYFLYLKVRHQLFNFNIFIEL 146
+ +II F+Y + ++Q+FN IF+ L
Sbjct: 253 ISMIILFVYFRYQNQIFNNLIFVSL 277
>AC006655-1|AAF39875.1| 391|Caenorhabditis elegans Serpentine
receptor, class w protein6 protein.
Length = 391
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 18 RPCNFTXFVISKLSSXANLQIIIYFLYLKVRHQLFNFNIFIELTKILMYVSS 173
+P N + FVI+ S + Y L V H +F F +F L + M+++S
Sbjct: 271 KPNNTSSFVIAMAISTFASEFA-YGLVFTVEHFIFGFEMFQTLKTLFMHLNS 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,496,828
Number of Sequences: 27780
Number of extensions: 192525
Number of successful extensions: 507
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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