Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F14
         (726 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    34   0.60 
AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    33   1.0  
AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens ...    32   1.8  
AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens ...    31   4.2  

>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 33.9 bits (74), Expect = 0.60
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -3

Query: 718 LYTHIYXCLFSEHTVHLITNNILHTXA---VRLCRISSCFACLDRKHSFSNNECVRYTVV 548
           +YTHI+ C+     +H+ T   +H      + +C  +  + C  RKH +++     YT +
Sbjct: 1   MYTHIHMCICMYTHMHMCTYVCIHIHICVHIYICMYTHRYMC-TRKHMYTHKHMYVYTYI 59

Query: 547 Y 545
           Y
Sbjct: 60  Y 60


>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +1

Query: 364 VHTHTHARTNAHIIAVVIMAP*RHHQISIHYKLC---YTMNIITTIVHHYHLKLIISPNE 534
           +HT+THA T+AHI   V      H  ++IH   C   YT    T +  H H+ +    + 
Sbjct: 105 MHTYTHAHTHAHIHIHV------HIHMNIHTHTCTHIYTCT-YTVVCTHTHMHIYTHMHT 157

Query: 535 VSNDKLRCTSHIHYY 579
            +   +   +H+H Y
Sbjct: 158 HTCIHIHSDTHLHIY 172


>AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44225 fis, clone THYMU3006168. ).
          Length = 262

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -3

Query: 721 YLYTHIYXCLFSEHTVHLITNNILHTXAVRLCRISSCFACLDRKHSFSNNECVRYTVVY 545
           Y+Y HIY C+     +H+ T+N   T  + +  +  CF+ L   ++ S N  V+  + Y
Sbjct: 206 YVYIHIYICIHMYTHIHIHTHNFSLTICLLMNTV--CFSILATGNNASMNMAVQIYLRY 262



 Score = 30.7 bits (66), Expect = 5.6
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -3

Query: 400 YVHSYARVYVCARVTSLRNIY*-TD--SLYFCSHLYFIRLMSFVTCVCHNDC 254
           Y+  Y  VY C  +    ++Y  TD  S+Y C H+Y   L +   CV    C
Sbjct: 2   YILVYTYVYTCICIRVYVHVYGCTDVYSMYICMHVYMCTLYTVYMCVYMCTC 53


>AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39621 fis, clone SMINT2001158. ).
          Length = 226

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 364 VHTHTHARTNAHIIAVVIMAP*RHHQISIHYKL-CYTMNIITTIVHHYHLKLIISPNEVS 540
           +H+HTH  T++H ++        H     H  +  +T  +  T + H HL   I  +  +
Sbjct: 28  IHSHTHPLTHSHPLSHTYPLTLTHIHTHPHTHISTHTHPLTVTHITHTHLLTHIHSHSFT 87

Query: 541 NDKLRCTSHIH 573
           +  +   +HIH
Sbjct: 88  HAHMHSHTHIH 98


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,975,905
Number of Sequences: 237096
Number of extensions: 1872331
Number of successful extensions: 3541
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3496
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)