Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F11
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125954-6|AAD14707.2|  346|Caenorhabditis elegans Serpentine re...    30   1.8  
AC006769-7|AAF60589.1|  346|Caenorhabditis elegans Serpentine re...    30   1.8  
Z81560-1|CAB04545.1|  381|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine rece...    28   7.4  
U23455-4|AAC46530.1|  103|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF022977-3|AAB88609.1|  554|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF000264-12|AAK70648.2|  467|Caenorhabditis elegans Hypothetical...    27   9.8  

>AF125954-6|AAD14707.2|  346|Caenorhabditis elegans Serpentine
           receptor, class t protein1 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 380 NVMSNPSNFLSLCPILFLFTYQINIIVLKYRFRTIILNVNEKAAIFIGQTRFC-YNASTA 204
           NV+ N +N +      FL+ Y    ++ KY + T +     K  I +     C ++A TA
Sbjct: 198 NVLHNINNPIVAISTTFLYFYLCYYLIFKYGYSTSMWLYKSKRQIILQGVIICFFHAGTA 257

Query: 203 VFIVLLKF 180
           +    ++F
Sbjct: 258 IIYEFVQF 265


>AC006769-7|AAF60589.1|  346|Caenorhabditis elegans Serpentine
           receptor, class t protein2 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 380 NVMSNPSNFLSLCPILFLFTYQINIIVLKYRFRTIILNVNEKAAIFIGQTRFC-YNASTA 204
           NV+ N +N +      FL+ Y    ++ KY + T +     K  I +     C ++A TA
Sbjct: 198 NVLHNINNPIVAISTTFLYFYLCYYLIFKYGYSTSMWLYKSKRQIILQGVIICFFHAGTA 257

Query: 203 VFIVLLKF 180
           +    ++F
Sbjct: 258 IIYEFVQF 265


>Z81560-1|CAB04545.1|  381|Caenorhabditis elegans Hypothetical
           protein K02E2.1 protein.
          Length = 381

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 130 FENLRQSDHTICSIVVLVELSIIGY-FVFVFICYGWLSFDC 11
           F  L ++D+   S+V ++ L II   F+F FI  G ++F C
Sbjct: 172 FNMLNKADYAAPSLVAILALIIISLGFMFAFIGMGCMTFAC 212


>U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein77 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 246 FYWSNPILL*RFYCRFYSFVEIYY 175
           FYWS  +L+  F+   ++F  +YY
Sbjct: 182 FYWSLGLLIFPFFVNIFTFARLYY 205


>U23455-4|AAC46530.1|  103|Caenorhabditis elegans Hypothetical
           protein F55E10.1 protein.
          Length = 103

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 133 NFENLRQSDHTICSIVVLVELSIIGYFVFVFICY-GWLSFDCDLS 2
           N + +   DHT   +V+L+ L I    + +F+CY GW     D+S
Sbjct: 15  NGDFVHAEDHTTAIVVLLIIL-IFCLLMAMFVCYLGWSGVVTDMS 58


>AF022977-3|AAB88609.1|  554|Caenorhabditis elegans Hypothetical
           protein ZK994.1 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 171 FDNKFQQNYKNGSRSVITKSGLTNKNGGFFID 266
           + NK+    KN S  V+  SGL   +G FF D
Sbjct: 109 YSNKYCIENKNCSVMVVVPSGLVQSHGSFFND 140


>AF000264-12|AAK70648.2|  467|Caenorhabditis elegans Hypothetical
           protein F43E2.1 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -1

Query: 365 PSNFLSLCPILFLFT--YQINIIVLKYRF 285
           PSN L++  +L+LF   Y  ++++L YRF
Sbjct: 280 PSNDLTVVQLLYLFACQYSNHVVLLNYRF 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,477,735
Number of Sequences: 27780
Number of extensions: 290029
Number of successful extensions: 687
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)