Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F10
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   9.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.6  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 566 KRNLPKTTMKKKKVLNPNQLKNHTKKN 486
           + N P T+  +    N N   NH +KN
Sbjct: 365 RNNQPSTSNNRWHNNNGNNSNNHWRKN 391


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 245 NIPMNIPKQKRTN 207
           NIP N PK K+ N
Sbjct: 225 NIPQNNPKNKQHN 237


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 145 C*CSD*YCGRSCSPKI 98
           C CSD Y G  C  +I
Sbjct: 170 CHCSDGYSGSYCQTEI 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,632
Number of Sequences: 336
Number of extensions: 1685
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)