Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F10
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    29   0.64 
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   3.4  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   5.9  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    26   5.9  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    25   7.9  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   7.9  

>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 605 VKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKS 459
           + K L++ +  +    LPK   K ++   PN L    +K +V  PT +S
Sbjct: 183 MNKYLTNLMTKIPDDQLPKPQPKNEEPAAPNDLPKQEEKELVEPPTAES 231


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -1

Query: 596 VLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKN 501
           VL+  +KN ++ NLPK + KKKKV    Q KN
Sbjct: 70  VLNDFLKNFLELNLPKAS-KKKKVSLGVQDKN 100


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 488 NIVRKPTMKSLLKHLTKNTVNP*KNYLLRA 399
           + + KP  KSL++ L ++T+NP +  +L A
Sbjct: 271 DFISKPPTKSLIRLLAEHTLNPVEKSVLLA 300


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/64 (28%), Positives = 24/64 (37%)
 Frame = -1

Query: 554 PKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTVNP*KNYLLRATNHQAKNT 375
           P+  +KK+KV N    K   ++ I +K   K   K   K       NY  R       N 
Sbjct: 15  PEVLLKKRKV-NERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNR 73

Query: 374 QQKN 363
             KN
Sbjct: 74  SAKN 77


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 536 KKKVLNPNQLKNHTKKNIVRKPTMKSLLKHL 444
           K   LN + LKN    N+ R  T+++LL+H+
Sbjct: 4   KTVFLNGDFLKNSVNVNLNRLATVETLLRHV 34


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
 Frame = -3

Query: 690 NEQLKVET---KTEHSESHHAPIV 628
           +E L+ ET   KTEH++S+H P V
Sbjct: 131 DEGLRTETIVKKTEHADSNHQPAV 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,304
Number of Sequences: 5004
Number of extensions: 30543
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)