Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F08
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    34   0.077
AF016420-1|AAB65307.2|  310|Caenorhabditis elegans Serpentine re...    28   5.1  
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    27   6.7  
AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    27   6.7  
Z72515-3|CAA96683.2|  330|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
 Frame = +2

Query: 98  LIYHPQVEVYQYTTYDNTSD-FYKNVYYFLTKRSKML-SYICAPYTESNER*NCVYASVL 271
           LIY P + V +  ++ ++    Y + Y F      M    +  PY  SN   NC   S+L
Sbjct: 199 LIYIPVMIVTRKNSHQHSQQHIYLHEYVFFQSCLVMFFKLVTLPYFLSNLEYNCASTSML 258

Query: 272 FCKSSKVILDLLSVNMMVNECNITTARGTTMSLYPKNAFYICFPLVRYNTHKLRSHISLF 451
               + V+   L + +   +CNI        S   +  F + F  V  + H   S I+  
Sbjct: 259 SMSLADVVTTPLIIQLSYLKCNIHDVICLFFSFDIQKYFRVVFGNVENSVHPNLSRIAFS 318

Query: 452 FT 457
            T
Sbjct: 319 IT 320


>AF016420-1|AAB65307.2|  310|Caenorhabditis elegans Serpentine
           receptor, class sx protein11 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 430 QKSYFIVFHITFILHTNTHADLSWKVLN 513
           Q S  IVFH  FILH ++  D S   LN
Sbjct: 280 QTSSAIVFHTNFILHKSSTMDFSASRLN 307


>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
           protein C26G2.1 protein.
          Length = 1270

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 104 YHPQVEVYQYTTYDNTSDFYKNVYYFL-TKRSKMLSYIC 217
           YH    +  ++T D  S   KN+Y F+ ++   M  Y C
Sbjct: 270 YHENKRLQSHSTLDTRSKEIKNIYSFIASQNDNMAEYEC 308


>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +1

Query: 337 HYYCKRNDNVSLPKECFLYLLSLGQI*HT*TQKSYFIVFHITFILHTNTHADLSWKVLNH 516
           +Y+C  N  ++ P+ C     S+         KS  ++F +TF       + L WKV   
Sbjct: 146 YYFC--NFELTFPRNCLTIGCSINACSSRFWTKSKLVIFVLTFSFAALLSSKLLWKVFKK 203

Query: 517 NS 522
           ++
Sbjct: 204 DN 205


>Z72515-3|CAA96683.2|  330|Caenorhabditis elegans Hypothetical
           protein T11A5.3 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 98  LIYHPQVEVYQYTTYDNTSDFYKNVY 175
           +I H  ++++ YTT DN  D   N+Y
Sbjct: 75  IILH-SIDLFNYTTQDNPCDMVPNIY 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,285,715
Number of Sequences: 27780
Number of extensions: 256550
Number of successful extensions: 826
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)