Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F06
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    38   0.002
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    29   0.80 
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.8  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.4  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    27   3.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   4.2  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   5.6  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   7.4  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   9.8  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 633 QAXSTGQVYIPDRRRQTLADTXYVPQQENEV--YYPQQPENPIFSPTQATELADP 475
           +A +   VY+PD          Y+P+    V  YYPQQP  P+F  ++ TEL DP
Sbjct: 490 EALNISCVYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = -1

Query: 287 SHHPECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKN 111
           SHHP   +P    C       P + P   PQ+P+H   V   SP     P   P  + N
Sbjct: 136 SHHPPLHNPLPVSCQ------PVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPN 188


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 172 TCAVCVGNCGRASGTTCGPTSPSEEHWE 255
           TCA+C+  C +     C   S  E  +E
Sbjct: 83  TCAICIRQCHKCESNVCSMCSKQERTFE 110


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 647 SPKPHRRXQRARCTYLIVAARPLPIPXTYRNKKTKXITLSNQRTRSS 507
           S   H    +    + +++   +P+P  YR    +  TLSN++T  S
Sbjct: 45  SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
 Frame = -1

Query: 239 DGEVGPQVVPEARPQLPTHTAQ------VEEASPQATPPPTVDPDRMKNCKP 102
           DG  G    P+ + Q  T +AQ      VE+ +PQ T P  VD  +     P
Sbjct: 366 DGIPGKAASPQVQQQQQTSSAQQQQPQRVEQPAPQTTQPTQVDTQQAAKPAP 417


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 406 SGRRFGSLGNRYQSGGVQFDLFSGVSQFGR 495
           +G  FG+  N   +GG  F + SG   FG+
Sbjct: 64  NGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 195 LRSGLRDHLRPYLPIRRTLGRTRMWALWVVRS 290
           LR+  +  L  +LP RRT G  ++WA + V +
Sbjct: 838 LRNFKQGSLVLFLPTRRTAGNKKVWAAFNVNA 869


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -3

Query: 555 QENEVYYPQQPENPIFSPTQATELADPTE 469
           + N   YPQ  + P+  P  A    DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 563 YRNKKTKXITLSNQRTRSSAPLKRPNWLT 477
           +R+     I L ++  RSS   K PNWL+
Sbjct: 789 HRDDYASIILLDSRYNRSSIQRKLPNWLS 817


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,871
Number of Sequences: 5004
Number of extensions: 40851
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)