Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F05
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   2.4  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   4.2  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.6  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   7.4  

>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -1

Query: 217 YGHVE*TCSQCSESAVTYFGFTF*TSDFRANFICNLISFYFI-CLSKN*RKFNCCNSNSN 41
           Y HV+  C   +E++ T F   F  S    N +     FY I   SKN   +    ++SN
Sbjct: 278 YPHVDTYCLMSAENSYTEFHIEFGGSSAYYNILDGCKIFYLIPGTSKNWEAYTAWLTSSN 337

Query: 40  D 38
           D
Sbjct: 338 D 338


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 129 LISFVILYLFILYVFQKIKENLTVVIQIPTIF 34
           L +F  LY+F L + Q+   +  ++ Q+PT F
Sbjct: 300 LFTFECLYIFSLVIDQETLSSFELINQVPTNF 331


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 417 SSEPLSSFDFNILTLFRLEHGDYKHSNQ-RSLFHHGDSDVYYARVIK 280
           + E  S FD ++ T   + HGD   SN+ R  F+ G+ ++   R+++
Sbjct: 153 NGEGSSMFDADMTTSNAVAHGDESISNEFRESFYFGNDNLSKDRLLR 199


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 288 HGRSRHQNRHDGREIFDCCVCS 353
           H + RH+  H G + F C  C+
Sbjct: 613 HDKRRHEQLHTGIKAFACVTCN 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,031
Number of Sequences: 5004
Number of extensions: 43910
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)