Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F05
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    30   1.7  
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    27   9.1  
AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF021905-1|AAB84394.1|  358|Caenorhabditis elegans presenilin pr...    27   9.1  
AF000265-8|AAB52948.1|  358|Caenorhabditis elegans Homolog of pr...    27   9.1  

>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -1

Query: 190  QCSESAVTYFGFTF*TSDFRANFICNLISFYFIC--LSKN*RKFNCCNSNSNDFHVCN 23
            QCS  +    GF   T     N ICN +  Y  C  +  + +   CC +N+N+ ++ N
Sbjct: 1326 QCSSLSGVVGGFQVNTYHCMPNSICNSLELYDNCKPVWNDNQVTGCCCNNANNCNIAN 1383


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -1

Query: 190  QCSESAVTYFGFTF*TSDFRANFICNLISFYFIC--LSKN*RKFNCCNSNSNDFHVCN 23
            QCS  +    GF   T     N ICN +  Y  C  +  + +   CC +N+N+ ++ N
Sbjct: 1326 QCSSLSGVVGGFQVNTYHCMPNSICNSLELYDNCKPVWNDNQVTGCCCNNANNCNIAN 1383


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
            protein C39D10.7 protein.
          Length = 1185

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 217  YGHVE*TCSQCSESAVTYFGFTF*TSDFRANFICNLISFYFICLSKN*RKFNCCNS 50
            Y H   TC     S +      F  SD   +  C+  S+YF C+ +  RK +C NS
Sbjct: 934  YKHTVDTCKIGKGSDIIDSNACFGKSDGYYSAGCS--SYYFSCIDEQIRKMSCPNS 987


>AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical
           protein H37A05.1 protein.
          Length = 823

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 366 LEHGDYKHSNQRSLFHHGDSDVYYARVIKSLLIEEKGLMMYYYYS 232
           LEH ++ H +      H D  + Y    K L+ E+K    +Y+++
Sbjct: 756 LEHSNFTHWHMTPKDVHDDELLEYEAQRKKLIAEQKAKNSFYFFA 800


>AF021905-1|AAB84394.1|  358|Caenorhabditis elegans presenilin
           protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 123 SFVILYLFILYVFQKIKENLTVVIQIPTIFMYVI 22
           S  IL ++ ++ FQ+I E  ++ + +PT F  ++
Sbjct: 95  SIGILLVYSVFHFQRIAEAQSIPVSVPTFFFLIL 128


>AF000265-8|AAB52948.1|  358|Caenorhabditis elegans Homolog of
           presenilin protein 1 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 123 SFVILYLFILYVFQKIKENLTVVIQIPTIFMYVI 22
           S  IL ++ ++ FQ+I E  ++ + +PT F  ++
Sbjct: 95  SIGILLVYSVFHFQRIAEAQSIPVSVPTFFFLIL 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,570,952
Number of Sequences: 27780
Number of extensions: 237529
Number of successful extensions: 428
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)