Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_F04
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       27   2.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po...    26   4.7  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   8.2  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   8.2  

>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 165 IRKIFNKNNTVAYISAAIGEYCINN 91
           +RK+ ++N TVAY++  + + C+ N
Sbjct: 51  VRKVNDRNPTVAYLALNLLDICVKN 75


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 162 RKIFNKNNTVAYISAAIGEYCINNSLHDNYL 70
           RKI N ++ +  I  A G  C+N+   D +L
Sbjct: 582 RKILNSSDAITSIPLAFGAICLNSQGFDLFL 612


>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 153 FNKNNTVAYISAAIGEYCINNSLHDNYLI*IRSEIC 46
           FN    + Y    + E C+ N L   YL  I  +IC
Sbjct: 54  FNTRVNIMYFVDTLCEMCLKNGLTGGYLNMISRDIC 89


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 153 FNKNNTVAYISAAIGEYCINNSLH 82
           FNKNNT  Y S+A  +  + N ++
Sbjct: 28  FNKNNTPDYSSSASSDQLLKNDIN 51


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 381 FNYSNRYFISLLNRS*KSFVHNI 313
           F Y NRY++ L NR  ++ V++I
Sbjct: 132 FGYLNRYWVKLKNRFTETLVYDI 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,112
Number of Sequences: 5004
Number of extensions: 46315
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)