Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_E23
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   167   2e-42
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.2  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   9.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   9.1  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  167 bits (405), Expect = 2e-42
 Identities = 79/157 (50%), Positives = 108/157 (68%), Gaps = 2/157 (1%)
 Frame = -2

Query: 616 KENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVA 437
           K NGTVTA NASTLNDG            K L +KP+A+I+G+ +   DP  F  +P++A
Sbjct: 239 KSNGTVTAANASTLNDGASALVLMSAAKVKELGLKPLAKIIGWGEAAQDPERFTTSPSLA 298

Query: 436 IPKLLEKTGVRKEDVALWEINEAFSVVAVANQXLLGLDPSKINVHGGAVSLGHPXGMSGA 257
           IPK L+  G+    V  +EINEAFSVVAVAN  +LGLDP ++N++GG V++GHP G SG+
Sbjct: 299 IPKALKHAGIEASQVDYYEINEAFSVVAVANTKILGLDPERVNINGGGVAMGHPLGSSGS 358

Query: 256 RIVVHLCHAL--KKGEKGVASICNGGGGASSVMIXKM 152
           RI+  L + L  K  + GVA++CNGGGGASS++I ++
Sbjct: 359 RIICTLAYILAQKDAKIGVAAVCNGGGGASSIVIERV 395


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 436 IPKLLEKTGVRKEDVALWEINEAFSVVAVANQXLLGLDPSKINVHGGAVSL 284
           + KL  +TG  +  ++L ++NE  S        L   DPS++ +  G V L
Sbjct: 628 LTKLNYETGKTENRLSLLQLNEQLSCSPADRAKLTLFDPSRLLIFKGVVKL 678


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 355 AVANQXLLGLD-PSKINVHGGAVSLGHPXGMSGARIVVHLCHALK 224
           +++++ LL +D P+ +  + G   L      S A + VH+CHA+K
Sbjct: 194 SMSSRSLLIMDIPTTMRSNNGLSILASRLKSSEAPMHVHICHAIK 238


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 281 SSXWYVWSSHCCTSVPCFKKRRKGSC 204
           ++ W+VW+   CT +P  K+    +C
Sbjct: 398 TNIWWVWAESRCTEIPESKRTVFPNC 423


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 192 LQIEATPFSPFFKAWH 239
           L +E +P  PF+K WH
Sbjct: 285 LPLELSPGCPFYKIWH 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,389
Number of Sequences: 5004
Number of extensions: 42570
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)