Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_E23
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 157 5e-39
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 131 5e-31
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 107 6e-24
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 105 2e-23
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475... 29 4.1
07_03_1412 - 26392239-26392826 28 5.4
01_06_1224 - 35508842-35510404 28 5.4
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 28 7.1
02_03_0122 - 15491106-15491509,15492668-15492695 28 7.1
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 28 7.1
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 157 bits (382), Expect = 5e-39
Identities = 84/156 (53%), Positives = 104/156 (66%), Gaps = 2/156 (1%)
Frame = -2
Query: 622 FXKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPA 443
F + GTVTAGNAS+++DG A+ L ++ IARI GFAD P F +PA
Sbjct: 243 FKENGGTVTAGNASSISDGAAALVLVSGQKAQELGLQVIARIKGFADAAQAPELFTTSPA 302
Query: 442 VAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQXLLGLDPSKINVHGGAVSLGHPXGMS 263
+AIPK L G+ V +EINEAFS VA+ANQ LLG+ KINVHGGAVSLGHP G S
Sbjct: 303 LAIPKALANAGLESSRVDYYEINEAFSAVALANQKLLGIPSEKINVHGGAVSLGHPLGCS 362
Query: 262 GARIVVHLCHAL--KKGEKGVASICNGGGGASSVMI 161
GARI+V L L K G+ GVA +CNGGGGAS++++
Sbjct: 363 GARILVTLLGVLREKGGKIGVAGVCNGGGGASALVL 398
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 131 bits (316), Expect = 5e-31
Identities = 69/140 (49%), Positives = 90/140 (64%), Gaps = 2/140 (1%)
Frame = -2
Query: 574 NDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKED 395
+DG AK L ++ IARI G+AD P F PA+AIPK + G++
Sbjct: 250 SDGAAAIVLVSGQKAKSLGLQVIARIRGYADAAQAPELFTTTPALAIPKAVSNAGLQTSQ 309
Query: 394 VALWEINEAFSVVAVANQXLLGLDPSKINVHGGAVSLGHPXGMSGARIVVHLCHAL--KK 221
+ +EINEAFSVVA+ANQ LLG+ K+N+ GG VSLGHP G SGARI+V L L K
Sbjct: 310 IDYYEINEAFSVVALANQKLLGIPSGKLNLSGGGVSLGHPIGCSGARIIVTLLGILRHKN 369
Query: 220 GEKGVASICNGGGGASSVMI 161
G+ GVA +CNGGGGAS++++
Sbjct: 370 GKIGVAGVCNGGGGASALVV 389
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 107 bits (258), Expect = 6e-24
Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 5/171 (2%)
Frame = -2
Query: 634 LSTVFXKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFP 455
L F K+ GT TAGNAS ++DG A + + + FA DP
Sbjct: 275 LKPAFSKD-GTTTAGNASQVSDGAGAVLLMRRDIAMQKGLPIVGVFRSFAAVGVDPAIMG 333
Query: 454 IAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQXLLGLDPSKINVHGGAVSLGHP 275
+ PAVAIP ++ G++ +DV L+EINEAF+ V LGLDP+K+NV+GGA++LGHP
Sbjct: 334 VGPAVAIPAAVKAAGLQIDDVDLFEINEAFASQYVYCCKKLGLDPAKVNVNGGAMALGHP 393
Query: 274 XGMSGARIVVHLCHALKKGEK----GVASICNGGG-GASSVMIXKM*VDDI 137
G +GAR V L + +K+ K GV S+C G G GA++V VD++
Sbjct: 394 LGATGARSVSTLLNEMKRRGKDCRFGVISMCIGSGMGAAAVFERGDAVDEL 444
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 105 bits (253), Expect = 2e-23
Identities = 64/161 (39%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
Frame = -2
Query: 634 LSTVFXKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFP 455
L VF K+ GT TAGN+S ++DG A + + + FA DP
Sbjct: 273 LKPVFRKD-GTTTAGNSSQVSDGAGAVLLMRRDVAMKKGLPILGVFRSFAAVGVDPAVMG 331
Query: 454 IAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQXLLGLDPSKINVHGGAVSLGHP 275
+ PAVAIP ++ G++ ED+ L+E+NEAF+ V LGLD SK+NV+GGA++LGHP
Sbjct: 332 VGPAVAIPAAVKSAGLQIEDIDLFELNEAFASQFVYCCNKLGLDRSKVNVNGGAIALGHP 391
Query: 274 XGMSGARIVVHLCHALKKGEK----GVASICNGGG-GASSV 167
G +GAR V L + +K+ + GV ++C G G GA++V
Sbjct: 392 LGATGARCVATLLNEMKRRGRDCRFGVVTMCIGSGMGAAAV 432
>11_01_0596 +
4755453-4755490,4755675-4756047,4757739-4758940,
4759026-4759392
Length = 659
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = -2
Query: 424 LEKTGVRKEDVALWEINEAFSVVAVANQXLL-GLDPSKINVHGGAVSLGHPXGMSGARIV 248
+E +E+ +++E + + ++ L D GGA SLG G G
Sbjct: 1 MEDASRGEEENSMFETSHVLGALLASSPLLARAWDRCAAAADGGASSLGFVHGGGGGGEG 60
Query: 247 VHLCHALKKGEKGVASICNGGGGA 176
+C A + +++ GGGGA
Sbjct: 61 EPVCVAFSGVQAALSAAAGGGGGA 84
>07_03_1412 - 26392239-26392826
Length = 195
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 457 PIAPAVAIPKLLEKTGVRKEDVALWEINEAFS 362
P+ A+P LE+T VR + V L+ EAF+
Sbjct: 88 PMTEGRALPPSLEETAVRAQGVYLYNSKEAFN 119
>01_06_1224 - 35508842-35510404
Length = 520
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 138 MSSTYIXSIXTDDAPPPPLQIEATPFSP 221
M S+ S + DAPPPP ++ P+SP
Sbjct: 1 MPSSPSSSAASVDAPPPPPELSHPPYSP 28
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 201 EATPFSPFFKAWHRCTTMRAPDIPXG*PKLTAP 299
+ PF+ F W RC M P P PK AP
Sbjct: 168 DGCPFTMFAPFWDRCLCMPDPAAPLLPPKRIAP 200
>02_03_0122 - 15491106-15491509,15492668-15492695
Length = 143
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 259 ARIVVHLCHALKKGEKGVASICNGG 185
AR+ VHL H +K +GVA C GG
Sbjct: 2 ARLAVHLVHLRRKPARGVA--CGGG 24
>01_03_0075 -
12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 373 EAFSVVAVANQXLLGLDPSKINVHGGAV 290
EAF+VV A++ +LGL P + + GG V
Sbjct: 142 EAFAVVREASKRVLGLRPFDVQLIGGMV 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,145,694
Number of Sequences: 37544
Number of extensions: 318672
Number of successful extensions: 929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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