Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_E22
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 213 2e-56
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 106 3e-24
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 101 1e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 89 6e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 83 3e-17
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 61 1e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 8e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 54 1e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 0.70
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.2
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 6.5
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 6.5
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 213 bits (519), Expect = 2e-56
Identities = 101/128 (78%), Positives = 105/128 (82%)
Frame = -2
Query: 610 ITIGNERFRXPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYP 431
ITIGNERFR PEALFQPS LG+E+ GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYP
Sbjct: 248 ITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYP 307
Query: 430 GIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 251
GIADRMQKE PERKYSVWIGGSILASLSTFQQMWISK+EYDESGP
Sbjct: 308 GIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 367
Query: 250 GIVHRKCF 227
GIV+RKCF
Sbjct: 368 GIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 106 bits (254), Expect = 3e-24
Identities = 51/128 (39%), Positives = 77/128 (60%)
Frame = -2
Query: 610 ITIGNERFRXPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYP 431
IT+G E F PE LF P +G E+ G+H ++ SI+ D+D+R LY+N V+SGG+T+
Sbjct: 253 ITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLR 312
Query: 430 GIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 251
G +R E PER ++ W+GGSILASLSTF+++ I+ EEY ++
Sbjct: 313 GFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQ 371
Query: 250 GIVHRKCF 227
++ R+ F
Sbjct: 372 NVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 101 bits (241), Expect = 1e-22
Identities = 54/127 (42%), Positives = 69/127 (54%), Gaps = 11/127 (8%)
Frame = -2
Query: 601 GNERFRXPEALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSG 449
G ERFR E LF PSF S G+HE VY SI+ CD ++R L N V++G
Sbjct: 292 GQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTG 351
Query: 448 GTTMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYS--VWIGGSILASLSTFQQMWISK 275
GT++ PG+++R+Q E S VW GGSILASL FQ +W+SK
Sbjct: 352 GTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSK 411
Query: 274 EEYDESG 254
+EYDE G
Sbjct: 412 QEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 88.6 bits (210), Expect = 6e-19
Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 12/131 (9%)
Frame = -2
Query: 610 ITIGNERFRXPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYP 431
I +G+ER+ PE LFQP +G E G+ E ++++I DVDIRK LY V+SGG++MY
Sbjct: 248 IKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYA 307
Query: 430 GIADRMQKE-----------XXXXXXXXXXXXXXXXPERKYSVWIGGSILAS-LSTFQQM 287
G+ R++KE P R+++V+IGG++LA ++ M
Sbjct: 308 GLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHM 367
Query: 286 WISKEEYDESG 254
W+SK E++E G
Sbjct: 368 WVSKAEWEEYG 378
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 83.0 bits (196), Expect = 3e-17
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Frame = -2
Query: 535 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEXXXXXXXXXXXXXXXX 356
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGSRLKIHASG 385
Query: 355 P--ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 230
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 386 HVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 61.3 bits (142), Expect = 1e-10
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 15/140 (10%)
Frame = -2
Query: 610 ITIGNERFRXPEALFQPSFLGMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMY 434
I +G ERF PE F P + + E V N + +D+RK LY N V+SGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 433 PGIADRMQKE--------------XXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSTF 296
+R+Q++ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 295 QQMWISKEEYDESGPGIVHR 236
+K +Y+E G I R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.4 bits (135), Expect = 8e-10
Identities = 29/115 (25%), Positives = 55/115 (47%)
Frame = -2
Query: 595 ERFRXPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 416
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 415 MQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 251
+++E W G S + F+ +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 54.4 bits (125), Expect = 1e-08
Identities = 36/126 (28%), Positives = 51/126 (40%)
Frame = -2
Query: 610 ITIGNERFRXPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYP 431
+ + NERF PE LF PS + + GI E V S+ +I+ L N V GG +P
Sbjct: 274 LNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFP 333
Query: 430 GIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 251
G R+ E + W S + L + I++ EY E G
Sbjct: 334 GFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGA 392
Query: 250 GIVHRK 233
I+ RK
Sbjct: 393 NIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.70
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Frame = -2
Query: 481 KDLYANTVMSGGTTMYPGIADRMQK---EXXXXXXXXXXXXXXXXPERKYSVWIGGSILA 311
K+LY++ ++ GG +PG A +++ + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 310 SLSTFQQMWISKEEYDESGPGIVHRK 233
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -2
Query: 334 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 233
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 171 ELGRAQHHTAPGSRGRAA*KHLRWT 245
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 530 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 402
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 383 DHQDQDHRSPREEVLRMDRWIHPG 312
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,451
Number of Sequences: 5004
Number of extensions: 37365
Number of successful extensions: 113
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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