Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_E20
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   2.7  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   6.3  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    26   6.3  

>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 46  KHPFLLTLISSFATS 90
           KHPFLL L +SF TS
Sbjct: 723 KHPFLLNLFASFQTS 737


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 222 FSQLRFCVLVSANVDQY--FRLNEN 290
           +SQ  FC+L SA +  Y  F  NEN
Sbjct: 616 YSQFYFCILSSAIIKMYLDFEFNEN 640


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 43  SKHPFLLTLISSFATSFHLSL 105
           SKHPF++TL  SF +  +L L
Sbjct: 210 SKHPFIVTLYHSFQSRDYLYL 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,610
Number of Sequences: 5004
Number of extensions: 46906
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)