Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_E19
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.10
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi... 31 0.13
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 29 0.72
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 28 1.3
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 26 5.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.1
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 25 6.7
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 8.8
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 25 8.8
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 25 8.8
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.8
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 8.8
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 25 8.8
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.5 bits (68), Expect = 0.10
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 28 LQRPTRSXSP*SHVEGPDDGHDVRQHGVPADLLQRRQVREARR-LDLA-SVRLGASVGDE 201
L+ P + S S + +DG QH ++ L+R++VR RR DL+ +LG+S G
Sbjct: 35 LETPRPNISRASTGQLAEDGDTSSQHEDSSEELKRQEVRGMRRHSDLSIDAKLGSSEGST 94
Query: 202 VDPELPL 222
LPL
Sbjct: 95 ASSALPL 101
>SPAC1851.02 |||1-acylglycerol-3-phosphate
O-acyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 279
Score = 31.1 bits (67), Expect = 0.13
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 394 LLDDAEGLAHLLDATQVPIVAVAVRPYGHV 483
LL +G HL QVPI+ +A++ YGH+
Sbjct: 192 LLPLKKGAFHLAVQAQVPIIPIAIQTYGHL 221
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 28.7 bits (61), Expect = 0.72
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Frame = -3
Query: 421 APVPPHH-RAVPQRHAPRGGQDRRRQAHPA----IPGGDEDVHGGADPPLQAVHAGLPGA 257
AP+PP H AVP A D + + HP+ D G + P A AG P
Sbjct: 266 APIPPLHVPAVPLTSASHSSSDGKSRKHPSPYKPYLNSSHDTLGSSTRPSSADTAGSPAT 325
Query: 256 A 254
+
Sbjct: 326 S 326
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 272 CVNSLKWWISASMDVFISSRDGGV 343
C+N + I+AS +VF RDGG+
Sbjct: 348 CLNCISLLIAASREVFAFCRDGGI 371
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 5.1
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 76 PDDGHDVRQHGVPADLLQRRQVREARRLDLASVRLGASVGDEVDPELPLG-SLHGGVGGA 252
PD+ DV V +Q+++VREA L L L +G +DP P G L+G G
Sbjct: 125 PDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIG--IDP--PRGVLLYGPPGTG 180
Query: 253 RRHLV 267
+ LV
Sbjct: 181 KTMLV 185
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -3
Query: 427 GDAPVPPHHRAVPQRHAPRGGQDRRRQAHP 338
G P+PP R+ P PR RQ P
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 201 LVSDGGSKPYRCKIKAPGFAHLAALEKIGRNSMLADIVAI 82
L+ G +PYRC +L AL K+ R + D+V +
Sbjct: 51 LIKSDGFEPYRCDRNIALGINLNALSKVLRCAQNEDLVTL 90
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 423 MRQSLRIIEQCLNDMPPGEVKTDDAKLTPPSREE 322
M S I+E ND+ P +V +++ + +REE
Sbjct: 259 MDSSSSIVEGFENDLSPSQVTLNESSIISSNREE 292
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 8.8
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 11/145 (7%)
Frame = +1
Query: 70 EGPDDGHDVRQHGVPADLLQRRQVREARRLDLASVRLGASVGD-----EVDPELPLG--- 225
+ D+ + V+QH + LL R ++ L S++ GAS+ D ++ L L
Sbjct: 163 DNADELYKVKQHHPNSRLLLRISTDDSNSLCRLSLKFGASLDDTGKLLDIAKSLELNVVG 222
Query: 226 -SLHGGVGG--ARRHLVALREQLEVVDQRLHGRLHLLPGWRGELGVVGLDLPGGHVVEAL 396
S H G G L A++ +V DQ L G+ +L LD+ GG + ++
Sbjct: 223 VSFHVGSGSYDPSAFLDAIQRSRQVFDQGLE------RGFNFDL----LDIGGGFMNDSF 272
Query: 397 LDDAEGLAHLLDATQVPIVAVAVRP 471
A+ + LD P + V P
Sbjct: 273 DGVADLIRSALDTYFDPSIRVISEP 297
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 375 PGEVKTDDAKLTPPSREEMKTSMEAL 298
PG+ K D+K+ P S EE++ + L
Sbjct: 36 PGQEKVSDSKVNPISAEELQFAQRDL 61
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 317 FISSRDGGVSLASSVLTSPGGMS 385
++SS+D SLAS VLT G S
Sbjct: 21 YMSSKDAATSLASRVLTIAKGSS 43
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 47 RSPRNPTSRVPMMATMSASMEFLPIFSSAARCAKP 151
+SP++ SR P + S + L +F+S A A+P
Sbjct: 677 QSPQSSLSRAPSTSKKSHFEDILGLFASPAPSAQP 711
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 343 ELGVVGLDLP--GGHVVEALLDDAEGLAHLLDATQVPIVAVAVRPYG 477
E+G+ +L G H + L+ + LAH D V + + P+G
Sbjct: 331 EIGIAKSELEFYGSHKAKVNLEILQRLAHRRDGHYVVVTGITPTPFG 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,883
Number of Sequences: 5004
Number of extensions: 46532
Number of successful extensions: 143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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