Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_E18
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    29   0.99 
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   1.7  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    27   3.0  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    25   9.3  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   9.3  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   9.3  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    25   9.3  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 22/93 (23%), Positives = 41/93 (44%)
 Frame = -2

Query: 782 MNVGILMDYIAENKXSNVTVIPEAGDDVLKKVTNVVGDPSFTSAILPWENLKIAYLLFKY 603
           +N+ +L   +      N  +      +V KK+  V    ++T A+  W  + I   +FK 
Sbjct: 576 LNIPLLRKCLTLRTDKNPFIEQPDEPNVTKKIYRV----TYTDALQRWNLVNIWRHIFKE 631

Query: 602 REKLNSGLSVIPERCEFWAVPVEFQNLHKIRVP 504
              LNSG+S     C ++   V+   + ++R P
Sbjct: 632 TVTLNSGIS-----CPWYGTNVKLFTVREVRQP 659


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 24/98 (24%), Positives = 39/98 (39%)
 Frame = +3

Query: 210 TCDYVLSTNVPHCPQRESIYS*CSTFIVLRFYYLLYAIKRVSRLQVMKINFDQLPRYAAT 389
           T D    T +P+C      +     F  L++ + LY  +R   ++    NF  LP  A +
Sbjct: 426 TLDNSFKTKLPNCNSSSFDFLKAPLFQTLQYLFRLYPYQRDFIIEESLTNFSHLPT-ARS 484

Query: 390 FTRVLPQRLSFHFCVAYQSRSLDEFVEFGHINPFADAE 503
            +R    RLS    + Y S      ++   I    D+E
Sbjct: 485 VSRT--YRLSNGKSIQYYSTLFVRLIQSCSIQNLFDSE 520


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 317 VQQIIESQDDEGTTLTINGFALWAVWNIG 231
           V +II  Q++E          LW +WN+G
Sbjct: 67  VNEIINEQNEENVIDQSRWSKLWRIWNVG 95


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -2

Query: 662 FTSAILPWENLKIAYLLFKYREKLNSGLSVIP--ERCEFWAVPVEF 531
           F    LPW+ LK A    KY EK+     V P  E CE    P EF
Sbjct: 214 FLRGSLPWQGLKAATNKQKY-EKIGEKKQVTPLKELCE--GYPKEF 256


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 383 GVPRKLIEIDFHDLK--PTYAFNGVQQIIESQDDEGTTLTINGFALWAVWNI 234
           G+PR+L+E+  H      T A   V  I+ + DD  T + IN  AL A+ ++
Sbjct: 290 GIPRRLVELLMHPSAQVQTPALRSVGNIV-TGDDVQTQVIINCGALSALLSL 340


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 654 TGETRIAYD-IGHFLQNVIAGFRYNSHVAXLILGDVI 761
           +GE  IA +   HF Q V++G RY      L+L  ++
Sbjct: 416 SGEYEIAIEHCFHFSQTVLSGLRYLQRYDWLLLRSIV 452


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 184 SPKTGLFIGPVTMSFPPMFHTAHNANPFIVNVVPSSS 294
           SPK       + M FPPM     ++ P + NV  SS+
Sbjct: 84  SPKIDGTAASIGMGFPPMSPNLQSSIPRLTNVSSSSN 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,829
Number of Sequences: 5004
Number of extensions: 68725
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)