Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_E18
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0038 + 375893-376093,376758-376883,376978-377177,377411-37...    31   1.0  
10_01_0114 + 1423051-1424319                                           29   4.2  
06_03_1262 - 28824736-28824906,28825297-28825371,28825530-288256...    29   5.5  
04_04_1449 - 33683791-33683940,33684036-33684110,33684849-336849...    29   5.5  
02_05_1114 + 34218218-34218463,34219143-34219179,34219450-342196...    29   5.5  
02_01_0379 + 2744535-2744581,2744653-2744712,2745334-2745461,274...    28   7.3  

>06_01_0038 +
           375893-376093,376758-376883,376978-377177,377411-377502,
           377966-378222,378610-378846,378986-379063,380422-380571,
           380646-380720,381109-381205,381289-381341
          Length = 521

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -2

Query: 695 KKVTNVVGDPSF--TSAILPWENLKIAYLLFKYREKL 591
           KKV  +VG+P +  +  +LPW+NL+  + L++ R  L
Sbjct: 370 KKVNLLVGEPFYLGSEGMLPWQNLRFWFDLWRSRSSL 406


>10_01_0114 + 1423051-1424319
          Length = 422

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/59 (33%), Positives = 23/59 (38%)
 Frame = -2

Query: 398 PSKCRGVPRKLIEIDFHDLKPTYAFNGVQQIIESQDDEGTTLTINGFALWAVWNIGGKD 222
           P     V R+LI  D     P Y F     +I  Q    TT T  GF +   WN G  D
Sbjct: 117 PDPSTAVQRELIVDD----NPAYGFGRADPLILMQV---TTFTCGGFVIGVTWNHGAAD 168


>06_03_1262 -
           28824736-28824906,28825297-28825371,28825530-28825621,
           28825741-28825827,28826049-28826207,28826314-28826412,
           28826528-28826655,28827066-28827238
          Length = 327

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -2

Query: 296 QDDEGTTLT-INGFALWA-VWNIGGKDIVTGPIKSPVLGENIEWDPHTRQAVKILKKTFT 123
           Q DE   +    GF +WA  W +GG   V+      +L + +  DP  ++ V      F 
Sbjct: 198 QSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEVVDSSLEFL 257

Query: 122 MKTSD 108
           +  SD
Sbjct: 258 ILASD 262


>04_04_1449 -
           33683791-33683940,33684036-33684110,33684849-33684940,
           33685020-33685106,33685460-33685615,33685706-33685804,
           33686180-33686307,33687355-33687416
          Length = 282

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 263 GFALWA-VWNIGGKDIVTGPIKSPVLGENIEWDPHTRQAVKILKKTFTMKTSD 108
           GF +WA  W +GG   V+      +L + +  DP  R+ V      F +  SD
Sbjct: 172 GFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVVDPEIREEVIDHSLEFLILASD 224


>02_05_1114 +
           34218218-34218463,34219143-34219179,34219450-34219633,
           34219725-34219873,34220271-34220504,34220592-34220781,
           34220863-34220988,34221386-34221485,34221598-34221957
          Length = 541

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -2

Query: 284 GTTLTINGFALWAVWNIGGKDIVTGPIKSPVLGENIEWDPHTRQAVKILKKTFTMKTSDK 105
           G  L + GF  WAV+ +GG   V+           +  D   R A+ +  + F   T D 
Sbjct: 4   GLLLKLVGFCFWAVFWLGGAATVSTNAGGEAAAAAVVVD--ARSAIAVTDEDFVCATLDW 61

Query: 104 W 102
           W
Sbjct: 62  W 62


>02_01_0379 +
           2744535-2744581,2744653-2744712,2745334-2745461,
           2745553-2745651,2745742-2745900,2746125-2746211,
           2746300-2746391,2746629-2746703,2746805-2746984
          Length = 308

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -2

Query: 296 QDDEGTTLT-INGFALWA-VWNIGGKDIVTGPIKSPVLGENIEWDPHTRQAVKILKKTFT 123
           Q DE   +    GF +WA  W +GG   V+      +L + +  DP  ++ +      F 
Sbjct: 176 QSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEIVDSSLEFL 235

Query: 122 MKTSD 108
           +  SD
Sbjct: 236 ILASD 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,037,020
Number of Sequences: 37544
Number of extensions: 423096
Number of successful extensions: 964
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)