Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_E18
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034364-2|CAA22252.1|  630|Caenorhabditis elegans Hypothetical ...    78   6e-15
U23450-1|AAK31467.2|  422|Caenorhabditis elegans Cpeb polya bind...    31   0.93 
Z78012-2|CAB01412.1|  120|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC024830-5|AAK68534.3|  444|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AF039051-2|AAB94262.1|  413|Caenorhabditis elegans Nuclear hormo...    28   8.7  

>AL034364-2|CAA22252.1|  630|Caenorhabditis elegans Hypothetical
           protein W06D4.4 protein.
          Length = 630

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 56/208 (26%), Positives = 93/208 (44%)
 Frame = -2

Query: 770 ILMDYIAENKXSNVTVIPEAGDDVLKKVTNVVGDPSFTSAILPWENLKIAYLLFKYREKL 591
           I   YI   K +NV +I E    +      V+ +P + SA+ PW +L+  Y +   +   
Sbjct: 398 IFFKYIHYYKLTNVEII-EKVTSLTDSPDIVLAEPFYMSAMNPWNHLRFLYDVEVLKMMH 456

Query: 590 NSGLSVIPERCEFWAVPVEFQNLHKIRVPLGVCEGIDMSKFDELVETSRLISDAEVEAQP 411
              L V P      A+P +F++L  I   +G   G D+S FDE+   +R  +DA V+ Q 
Sbjct: 457 GDELRVEPHMGVLKAIPEKFEDLQNIASDVGTVNGFDLSFFDEISTKARTATDAIVDEQS 516

Query: 410 LWEYPSKCRGVPRKLIEIDFHDLKPTYAFNGVQQIIESQDDEGTTLTINGFALWAVWNIG 231
           LWEY    +G   +++        P       Q+ + + D+  ++   N   +W  W  G
Sbjct: 517 LWEYAGIVKGDAVEILRF------PIDGRVSSQKCVVNIDNMSSS---NAIPMWMEWEFG 567

Query: 230 GKDIVTGPIKSPVLGENIEWDPHTRQAV 147
           G ++ TG +     G   EW+   +Q V
Sbjct: 568 GINLSTGLLSISSAGVP-EWNKGYKQGV 594


>U23450-1|AAK31467.2|  422|Caenorhabditis elegans Cpeb polya binding
           family protein 2 protein.
          Length = 422

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 22/67 (32%), Positives = 28/67 (41%)
 Frame = +3

Query: 411 RLSFHFCVAYQSRSLDEFVEFGHINPFADAERHPYFV*ILKFHRHGPELASLRYDRQTAV 590
           R++F    AY     D ++   H +     E  PYF     FH    E  S RY RQ A 
Sbjct: 332 RVAFSDYDAYVQAITDRYIVLDHEDIHKRVEIKPYF-----FHNQSCEECSGRYHRQHAP 386

Query: 591 QFLPILK 611
            F P L+
Sbjct: 387 YFCPSLE 393


>Z78012-2|CAB01412.1|  120|Caenorhabditis elegans Hypothetical
           protein C52E4.2 protein.
          Length = 120

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 404 EYPSKCRGVPRKLIEIDFHDLKP-TYAFNG 318
           E+  K  G+P+  + I FHDL P T  FNG
Sbjct: 82  EFCGKELGLPKDKVVITFHDLPPATVGFNG 111


>AC024830-5|AAK68534.3|  444|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.4 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 473 WTYQSLRRRRAAPLFCVNSEIPPARPRTRISPV*PTNRCSISPYT*TVN 619
           W  + LR R     F + SE PP  P    +P   +   +++P + TVN
Sbjct: 95  WIDERLRLRELQDRFSMPSEYPPWHPSLVFAPPVTSKYTTLAPTSGTVN 143


>Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 494 RRRAAPLFCVNSEIPPARPRTRIS-PV*PTNRCSISPYT*TVNRQ 625
           +RRA PL    +  PP+R R R+S P+ P  R S +P +   NR+
Sbjct: 283 QRRAVPLRRGTTSGPPSRLRGRMSHPMGPPRRSSGAPPSSASNRR 327


>Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 494 RRRAAPLFCVNSEIPPARPRTRIS-PV*PTNRCSISPYT*TVNRQ 625
           +RRA PL    +  PP+R R R+S P+ P  R S +P +   NR+
Sbjct: 283 QRRAVPLRRGTTSGPPSRLRGRMSHPMGPPRRSSGAPPSSASNRR 327


>AF039051-2|AAB94262.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 155 protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
 Frame = -2

Query: 494 CEGIDMSKFDELVETSRLISDAEVEAQPLWEYPSKCRGVPRKLIEIDFHDLKPTYAF-NG 318
           C G+D+ + +++    +    A V    +W +   C  +     +  F D +P Y F N 
Sbjct: 257 CPGVDILRQEDIEVLLKTFHFANVWLDAVWAFSRHCESI----CDSTFEDNEPLYQFINQ 312

Query: 317 VQQIIESQDDEGTTLTINGFA---LWAVWNIGGKD 222
           V+  + S   +   L I  FA    + VW +G  D
Sbjct: 313 VKSTLGSSLFQ-LKLNIYEFAALKAFCVWKLGYHD 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,602,652
Number of Sequences: 27780
Number of extensions: 383342
Number of successful extensions: 862
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)