Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_E17
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0933 + 32846658-32846729,32847038-32847133,32847243-328474...    31   0.67 
11_02_0070 - 8004397-8004645,8004796-8004961,8005039-8005793           30   2.0  
06_01_0362 - 2587112-2587774                                           29   2.7  
06_01_0908 - 7006160-7007488                                           28   8.3  
01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027     28   8.3  

>02_05_0933 +
           32846658-32846729,32847038-32847133,32847243-32847411,
           32847608-32847669,32848364-32849320,32850036-32850119,
           32850307-32850595,32850645-32850694
          Length = 592

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 494 NDAPSRRQDGSEGAHHRSLNLSGSVSCVAVASRVGVAVWSALRRLPRAS 640
           +D P  ++ G    HHR+  L   V  V   +R G   WS +RRL  +S
Sbjct: 511 DDNPKTKRGGKR-KHHRAWTLCEVVKLVDGVARYGAGKWSEIRRLAFSS 558


>11_02_0070 - 8004397-8004645,8004796-8004961,8005039-8005793
          Length = 389

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 596 GVAVWSALRRLPRASCPPGTRN*GIQSNRN 685
           G A+W A RR  R  CPP TR+  I  +RN
Sbjct: 136 GRALW-ACRRARRPDCPPATRSLTIYRSRN 164


>06_01_0362 - 2587112-2587774
          Length = 220

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 503 PSRRQDGSEGAHHRSLNLSGSVSCVAVASRVGVAVWSALRRLPRASCP 646
           P    DG     H ++ LS  V+CVA    +  ++ SA  R P+A  P
Sbjct: 6   PPSPPDGEHSFGHEAIALSFFVACVAATVVMASSMCSACGRKPKADDP 53


>06_01_0908 - 7006160-7007488
          Length = 442

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = +2

Query: 485 VEWNDAPSRRQDGSEGAHHRSLNLSGSVSCVAVASRVGVAVWS--ALRRLPRASCPPGTR 658
           V+   A   R DG  G HHR      +  C+ +     + +W+   LRRL   S P   R
Sbjct: 383 VDVTPAMMARADGHPGEHHRRWRGRNANDCLHLCLPGPINMWNDVLLRRLAELSPPSDAR 442


>01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027
          Length = 408

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 596 GVAVWSALRRLPRASCPPGTRN*GIQSNRN 685
           G A+W+  ++ PR  CP G  +  I + RN
Sbjct: 131 GDALWACKKQQPRGHCPTGASSLTISNARN 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,497
Number of Sequences: 37544
Number of extensions: 251462
Number of successful extensions: 458
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)