Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_E16
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    27   2.7  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   3.5  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   4.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   6.1  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   8.1  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      25   8.1  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   8.1  

>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/56 (23%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
 Frame = -3

Query: 588 DYKYGESAVLNAQLIE-IPYKGDQSSLIVVLPKDKDGITQLQEALKDPKTLETAQQ 424
           + ++G +A++++ LIE +  + +++ +I + P+D +   Q+Q   +  + L+ AQ+
Sbjct: 660 EQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQR 715


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = -3

Query: 495 KDKDGITQLQEALKDPKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMNVNKIF 319
           K +   +Q    LK   T  T   S+ ST  D++ LP+  ++++TN K    N+N++ + 
Sbjct: 774 KTRHDSSQSARQLKARSTATTISISL-STVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLS 832

Query: 318 N---NDAQITRLLK 286
           +   N   + +L+K
Sbjct: 833 SSTCNANSVNKLMK 846


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 654 SDRDFYVSKDKTIKVPMMYKRGDYKYGESAVL 559
           +D +F+  + K+ K    +K GD KYG++A+L
Sbjct: 666 NDPNFWAYERKSCK----FKNGDVKYGDTAIL 693


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
 Frame = -3

Query: 627  DKTIKVPMMYKRGDYKYGESAVLNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQEALKD- 451
            D   K+   +   + K  E   +N +L  +  K  +SSL V +  +   +TQL E  K+ 
Sbjct: 836  DNVQKLMHKHVNQESKVSELKEVNGKL-SLDLKNLRSSLNVAISDNDQILTQLAELSKNY 894

Query: 450  -------------PKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNND 310
                          K+LE  +Q +++   +L++   K+  +  +++  S+    K+    
Sbjct: 895  DSLEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQ 954

Query: 309  AQITRLLKGESLSVSEAI 256
             +I+  LK E++S S+AI
Sbjct: 955  EEISN-LKEENMSQSQAI 971


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = -3

Query: 579 YGESAVLNAQLIEIPYKGDQSSLIVVLPKDK-DGITQLQEALKDPKTLETAQQSMYSTEV 403
           Y ES +       + Y+G+ +++++  PKD  D  T  +E+ K+        + +   ++
Sbjct: 560 YLESQISTELFANLRYEGNDTTMMIAKPKDSWDFKTLFEESYKNQFGFSLIDRKIMVEDI 619

Query: 402 DL-YLPKFKIETETNLKDVLSNMNVNKIFNNDAQIT 298
            +  + +   ++E +        N N +F  D + T
Sbjct: 620 RIRAIARASNQSEVDTVFASETENENTVFIRDNKPT 655


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 449 LRRWKRLSKACIAPKSICIFPNSKLKRRRISKMF 348
           LRR++R+S A   PK+     NS ++ R+   MF
Sbjct: 27  LRRFRRISNASTIPKN--YLNNSTVENRKYKTMF 58


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 342 NMNVNKIFNNDAQITRLLKGESLSVS 265
           +++ NKI N    +TR LKG +LS++
Sbjct: 847 SVSENKILNRSFSLTRSLKGLALSLA 872


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,076
Number of Sequences: 5004
Number of extensions: 45301
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)