Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_E15
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    50   4e-07
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    34   0.022
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    31   0.21 
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    28   1.5  
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    26   5.9  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    25   7.8  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    25   7.8  

>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 24/43 (55%), Positives = 32/43 (74%)
 Frame = -1

Query: 690 VXVRRGRVTDMRTEHVLQPLHVTASALALATETVRAILKIDDI 562
           + VR+G VT++  E+VLQPL V  SA+ LA ET + I+KIDDI
Sbjct: 481 INVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDDI 523


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 663 DMRTEHVLQPLHVTASALALATETVRAILKIDDII 559
           DMR + V+ PL      L LAT+  R +LK++DII
Sbjct: 502 DMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDII 536


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 675 GRVTDMRTEHVLQPLHVTASALALATETVRAILKIDDIIN 556
           GRV DM    V +P  V   ++  A E+   +L++DDI++
Sbjct: 482 GRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVS 521


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 663 DMRTEHVLQPLHVTASALALATETVRAILKIDDII 559
           D +   +   L    SA+ LATETV  +L +D ++
Sbjct: 492 DAKEAGIFDVLLAKKSAIRLATETVLTVLNVDQVV 526


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -3

Query: 364 PILATHKRPAGCSLSKSTYLSHSKGNKSILLIY*VGNISLSNHVVRNFVGDW 209
           P++   K    C+    TYLS++    S   I  +G+  L++  + N +G W
Sbjct: 119 PVVRHSKLKPLCTEELYTYLSNNSHVSSASQILFIGDRLLTDITLANIMGSW 170


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 406 EDISKIFSKIRCDQPILATH-KRPAGCSLSKSTYLSHSKGNKSILLIY*VGNISLSNHVV 230
           ED+ KIF       PIL  H KR     L+ S + S SK N    ++   G + + +   
Sbjct: 204 EDLKKIFRSSSFFYPILMEHIKRCTSLDLTNSVF-SLSKVNTDCAILTSSGKLKIFSK-A 261

Query: 229 RNFVGDWL 206
           +N V D L
Sbjct: 262 QNIVFDVL 269


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 408 EKIFLRYSARYDVINQYWRRINVQQGVLY 322
           EK+ LR+    D I   W   + Q G LY
Sbjct: 88  EKLHLRFDVNKDSITIMWDNPDFQDGTLY 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,884
Number of Sequences: 5004
Number of extensions: 57359
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)