Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_E15
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0620 - 19321612-19323237 54 1e-07
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 53 2e-07
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 31 0.86
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 30 2.0
07_03_1267 + 25318220-25318407,25318674-25318844,25319086-253191... 29 4.6
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 29 4.6
02_01_0565 + 4141592-4141879 28 6.1
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 28 8.0
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334... 28 8.0
>10_08_0620 - 19321612-19323237
Length = 541
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = -1
Query: 690 VXVRRGRVTDMRTEHVLQPLHVTASALALATETVRAILKIDDII 559
+ VR+GR+T++ E+V+QPL V+ SA+ LA E VR ILKIDDI+
Sbjct: 495 INVRKGRITNILEENVVQPLLVSTSAVTLACECVRMILKIDDIV 538
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/44 (54%), Positives = 35/44 (79%)
Frame = -1
Query: 690 VXVRRGRVTDMRTEHVLQPLHVTASALALATETVRAILKIDDII 559
+ VR+G++T++ E+V+QPL V+ SA+ LA E VR ILKIDDI+
Sbjct: 504 INVRKGQITNILEENVVQPLLVSTSAITLACECVRMILKIDDIV 547
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -1
Query: 660 MRTEHVLQPLHVTASALALATETVRAILKIDDIIN 556
M+ ++V + L + LAT+ V+ ILKIDD+I+
Sbjct: 497 MKEQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 690 VXVRRGRVTDMRTEHVLQPLHVTASALALATETVRAILKIDDII 559
+ V G V DM+ + + V + L ATE IL++D+II
Sbjct: 471 IDVITGSVGDMQKRGISEAFKVKQAILLSATEAAEMILRVDEII 514
>07_03_1267 +
25318220-25318407,25318674-25318844,25319086-25319188,
25319394-25319885,25320723-25321156,25321333-25321388,
25321711-25321775,25322139-25322147
Length = 505
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 239 SCS*ELRRRLATGIPQRCP 183
+C+ E+RRRLA+G RCP
Sbjct: 27 TCTPEMRRRLASGPQDRCP 45
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 681 RRGRVTDMRTEHVLQPLHVTASALALATETVRAILKIDDIIN 556
R G + DM+ + V A A E +L+IDDI++
Sbjct: 488 RSGDIVDMKERKIWDSYSVKAQTFKTAIEAACMLLRIDDIVS 529
>02_01_0565 + 4141592-4141879
Length = 95
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 514 KYISSSSPFWLIHCIYNVINFEY 582
KYI +SSP L H IY ++ F Y
Sbjct: 45 KYIETSSPEPLFHVIYGLMAFSY 67
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 400 ISKIFSKIRCDQPILATHKRPAGCSLSKSTYLSHSKGNKSI 278
+ K FSK + L+ A CS S + S GNKSI
Sbjct: 83 LEKTFSKSMTENSSLSIESSRASCSSSSCSSFSSLDGNKSI 123
>01_01_0450 -
3344203-3344259,3344339-3344506,3344743-3344956,
3345039-3345101,3345582-3345769,3345846-3346029,
3346535-3346606,3346676-3346787,3346878-3346953,
3347050-3347100,3347179-3347260,3347331-3347567,
3347650-3347772,3348141-3348326,3348680-3349625,
3350426-3350551,3350683-3350811,3350918-3351049,
3351167-3351301,3351450-3351575,3352080-3352148,
3352149-3352205,3352302-3352436,3352600-3352704,
3352841-3352906,3353333-3353503,3353806-3353983
Length = 1395
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 319 KSTYLSHSKGNKSILLIY*VGNISLSNHVVRNFVGDWLPVF 197
KS +SHS K+ ++ GN+ NH + V ++P+F
Sbjct: 452 KSVLISHSSVQKARAVLEEEGNMKKENHKQLSNVDKYIPIF 492
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,692,373
Number of Sequences: 37544
Number of extensions: 314929
Number of successful extensions: 692
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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