Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_E15
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.4  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   8.4  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -3

Query: 310 YLSHSKGNKSILLIY*VGNISLSNHVVRNFVGDWLPVFHKDVLFW 176
           Y+    GN S L+++      + +H+++ F    L V      FW
Sbjct: 178 YMLEKSGNFSRLVVFFRFERQIGHHLIQTFAPSTLVVMLSWFSFW 222


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 444 VTHQSATNKMKHEKIFLRYSARYDVINQYWRRINVQQGVLY 322
           V+H +  N  K +   ++Y+   D+ +     INVQ  VLY
Sbjct: 667 VSHANQRNMYKLDLKNMKYTRSADLSSYNCVPINVQFSVLY 707


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 194 QRCPFLGNCFYYWINSII 141
           +RC F   C + ++N+I+
Sbjct: 141 ERCNFKAYCLFSFLNTIV 158


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 598 GCECERGSCNMKRLQHMLRAH 660
           GC C +G      L H+LR +
Sbjct: 608 GCRCVKGILLKSGLYHVLRGN 628


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 591 VRAILKIDDIINT 553
           ++AI+K+DDII T
Sbjct: 113 MKAIMKVDDIICT 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,356
Number of Sequences: 438
Number of extensions: 3797
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)