Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_E11
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 324 9e-90
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 142 7e-35
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 42 1e-04
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 42 1e-04
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 36 0.005
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 34 0.027
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 29 1.0
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 27 2.3
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 4.1
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 26 5.4
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 7.1
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 26 7.1
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 26 7.1
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 9.4
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 9.4
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 25 9.4
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 324 bits (796), Expect = 9e-90
Identities = 147/222 (66%), Positives = 173/222 (77%)
Frame = -2
Query: 791 ESILXGMVQSIHGSYKVKYHPEGPEGKEIEIDFTPPFXRVPMMATLERVLNVKLPAPDKL 612
E +L G+V+ + GSYKV YHPEGPEG + E+DF+ P+ R+ M+ LE LN K P D+L
Sbjct: 359 EELLSGLVKDLTGSYKVPYHPEGPEGPKWELDFSRPWRRINMIEYLEEKLNTKFPPGDQL 418
Query: 611 DTPEANDFLNNLCNTHQIECSPPRTTARLLDKLVSVFLEEECINPTFILDHPQIMSPLSK 432
TPEAN FL +LC H +EC+PP+T +RLLDKLV F+E ECINPTFI+ HPQ+MSPL+K
Sbjct: 419 HTPEANAFLRDLCAKHGVECAPPQTCSRLLDKLVGEFIESECINPTFIIGHPQMMSPLAK 478
Query: 431 YHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEAFC 252
YHR GL ERFE +VA KEICNAYTELND QR RFEEQA+ +A GDDE DE FC
Sbjct: 479 YHRSDAGLCERFEAFVATKEICNAYTELNDIFDQRARFEEQARQKAQGDDEAQIIDENFC 538
Query: 251 TALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFPAMKPD 126
TALEYGLPPTGGWG+GVDRL MFLTDSN I+EVLLFP MKP+
Sbjct: 539 TALEYGLPPTGGWGMGVDRLVMFLTDSNTIREVLLFPHMKPE 580
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 142 bits (343), Expect = 7e-35
Identities = 79/197 (40%), Positives = 112/197 (56%), Gaps = 7/197 (3%)
Frame = -2
Query: 701 IDFTPPFXRVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPPRTTARLL 522
+D F + + L++ LNV+L D ++ L ++ +I T A LL
Sbjct: 335 VDLEKGFEVIEFIPALQKELNVELSPLD--NSENCRKQLISIFKRCEIMLPKTCTVAHLL 392
Query: 521 DKLV-SVFLEEECINPTFILDHPQIMSPLSKYHRDVPGLTE-----RFEVYVAKKEICNA 360
DKL S+ L+ +P F+++HP++MSPL+K + G E RFE+Y+ EICNA
Sbjct: 393 DKLFDSLVLKYNTSSPKFVINHPEVMSPLAKSDIKLYGAVEQRISKRFELYIGGYEICNA 452
Query: 359 YTELNDPATQRERFEEQAKNRAA-GDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMF 183
Y E NDP Q +F+ Q +R GDDETP D F ALEYGLPPT GWG+GVDRL M
Sbjct: 453 YEEENDPVAQYHKFQAQKYDRLQLGDDETPAPDSDFVHALEYGLPPTAGWGMGVDRLVML 512
Query: 182 LTDSNNIKEVLLFPAMK 132
+T + I E+L F +++
Sbjct: 513 MTGQSKISEILPFGSLR 529
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 275 PPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSN-NIKEVLLFP 141
PP + + ++Y P GG+GLG++RL FL N N+KE + FP
Sbjct: 388 PPELQWYLDLMKYSNAPHGGFGLGIERLIAFLEGENTNVKETIPFP 433
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 41.5 bits (93), Expect = 1e-04
Identities = 33/111 (29%), Positives = 48/111 (43%)
Frame = -2
Query: 473 FILDHPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRA 294
F H + L K V GL +++ V E+ +++P QR ++ K
Sbjct: 471 FTAPHWDDVHLLEKKPLSVRGL--HYDIVVNGIELGGGSIRIHNPDIQRFVLKDVLKL-- 526
Query: 293 AGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 141
+ T E L G PP GG LG DRL LT++ I+EV+ FP
Sbjct: 527 --PENRYATFEHLIRVLSSGCPPHGGIALGFDRLAALLTNAPGIREVIAFP 575
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 36.3 bits (80), Expect = 0.005
Identities = 22/92 (23%), Positives = 41/92 (44%)
Frame = -2
Query: 416 PGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEAFCTALEY 237
P + ++ ++ +EI + ++DP ER + + G + + A
Sbjct: 488 PRYSNSYDFFMKGQEIMSGAQRIHDPELLVERMKALGVSPDVGLQQ-------YIDAFAI 540
Query: 236 GLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 141
G PP G G+G++R+ MF + NI+ FP
Sbjct: 541 GCPPHAGGGIGLERVVMFYLNLPNIRLASSFP 572
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 33.9 bits (74), Expect = 0.027
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 257 FCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 141
F +YG GG GLG++R +L D ++E LFP
Sbjct: 522 FTEQRKYGTTEHGGCGLGLERFLAWLCDRYTVRECCLFP 560
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 725 GPEGKEIEIDFTPPFXRVP---MMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIE 555
G + ++I PF ++P ++ +L VKL D PE ++NNL N+H +E
Sbjct: 390 GNNWRRMDIGIDYPFDQLPDEDIVRFPYAILEVKLQTQFGQDPPE---WVNNLVNSHLVE 446
Query: 554 CSP 546
P
Sbjct: 447 AVP 449
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 407 TERFEVYVAKKEICNAYTELNDPAT 333
+ER E+++ K E CN + NDP++
Sbjct: 217 SEREELFIKKLEQCNIIFDFNDPSS 241
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 26.6 bits (56), Expect = 4.1
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Frame = -2
Query: 350 LNDPATQRERFEEQAKNRAAGD--------DETPPTDEAFCTALE-YGLPPTGGWGLGVD 198
+ND +RF++ + R GD ++ D+ F + ++ Y TG G +
Sbjct: 435 INDKTMTSKRFDDLSATRKTGDNTKDRKQANKVRRQDQFFISHIQKYASSLTGAKGGQLK 494
Query: 197 RLTMFLTDSNNIKEVLLFPAMKPDDPNKNNTEEEN 93
R T+F N+ KE A+K + KN+ + +N
Sbjct: 495 RQTIFTQGPNSTKESK--QAVKEETSVKNSPKGKN 527
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 483 YTLLLQKYRNQFIQEPRGGPRWRALNLMS 569
Y+ L++KY FI++P W A + MS
Sbjct: 283 YSALIEKYPIVFIEDPFSEEDWGAFSYMS 311
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 636 HVKNTFQCCHHR-YSXKGWCEIDFYFLTL-WSFWMIFDLVGSM 758
H T CC ++ K W + FYF L WM D+ G +
Sbjct: 121 HAFTTTWCCMFELFAEKKWMIMSFYFPYLAIPLWMAIDMGGRL 163
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 219 AGRRQAIF*SCTKRFIGWGSFIVTSSTILGLLFESFA 329
+G +F C K I W S + TS+T + L S A
Sbjct: 343 SGHAPKVFSKCNKHGIPWLSVLATSATAILCLMSSQA 379
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 221 RSAAGHILELYKTLHRLGEFHRHQQHDSWLA 313
R A+G + L LH G+F + ++ +WLA
Sbjct: 592 RDASGKVTSLKLELHLDGDFKKTEKKVTWLA 622
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 458 DDPI*MSDLYTP---PPEIQKPIYPRASRWSSVAST 556
+DP MS LY P KP P+ASR S+AST
Sbjct: 535 EDP--MSTLYDTSRYPTRNSKPATPKASRPPSIAST 568
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 242 LELYKTLHRLGEFHRHQQHDSWLALRIFRVVSPGHLIRCRH 364
LE L +L E + HD++ ++F+ V P L C H
Sbjct: 336 LEKEPILQKLNELITYCAHDTYSTHQVFKKVFPQFLEVCPH 376
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 484 IHSSSRNTETNLSKSLAVVLGGEHSI**VLHR 579
IHS SR + T + + V + GEH I +H+
Sbjct: 315 IHSVSRGSRTTSGQPIEVHVPGEHPILYYIHK 346
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,514,927
Number of Sequences: 5004
Number of extensions: 77639
Number of successful extensions: 234
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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