Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_E10
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    29   0.62 
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    28   1.4  
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    27   2.5  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.5  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    27   4.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.8  

>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -1

Query: 450 ALLTNWDHLKKEVRQLKYFLSELGALIVAVEDLVALGQDRTHYLLTYKKCYA-MHVNFQI 274
           +L+ N+ HL +    L YFL+   A I  + D VAL     HY   Y++ ++ +HV    
Sbjct: 234 SLMVNYAHLGESKPILAYFLANAPAPIFRIFDRVALEATLLHY-PDYERIHSDIHVRITN 292

Query: 273 KRNIFT 256
               FT
Sbjct: 293 LPTCFT 298


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 398 YFSWRTSFFRWSQLVKRAEPRCSRDSWFQDT*EQTGAPCS 517
           YF WR  + + S+ +K+ EP   R++   +T  + G P S
Sbjct: 429 YFQWREQYRKMSKSIKKPEPSKEREA--SNTTSRKGVPPS 466


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = -3

Query: 259 YKELNRLRRSAISLGFSELLTCVSTALERECSALPSNAPPECALQLAHAIAALRDPRTAF 80
           +KE+ R RR AIS G  EL   V    + + S L   A    +L+    +   +      
Sbjct: 93  HKEVERRRREAISEGIKELANIVPGCEKNKGSILQRTAQYIRSLKEMEEMCREKSNLEKL 152

Query: 79  DIKHTLQPIA 50
              HT+Q +A
Sbjct: 153 VADHTIQELA 162


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 322 VVRAVLPKCYQILHRHYKSAKLGQEILQLAHFLLQVVPVGQEGRAKVQ 465
           VVR  +   Y I++  +++A   Q I    +FL  V+ + + G   V+
Sbjct: 443 VVREFMNAFYNIIYEAHQAADFSQAIYDFQYFLWDVIQLSKAGAPLVK 490


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 462 HLGSALLTNWDH-LKKEVRQLKYFLSELGALIVAVEDLVALGQDRTHYL 319
           ++G     N  H +KK    LK F S+L  LIV   DLV     R+  L
Sbjct: 208 YIGITTFPNLQHCIKKNQPILKQFTSQLQLLIVDESDLVIPDHGRSRRL 256


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 432  DHLKKEVRQLKYFLSELGALIVAVEDLVALGQDRTHYLLTYK 307
            DHL +E+R  +  L E  +LI+++E+ ++  + +   LL  K
Sbjct: 1400 DHLNQEIRLKEDVLKEKESLIISLEESLSNQRQKESSLLDAK 1441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,361,377
Number of Sequences: 5004
Number of extensions: 66478
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)