Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_E10
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 32 0.65
11_02_0040 - 7665220-7666656 32 0.65
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 31 1.1
05_07_0126 + 27869058-27869805,27869988-27870328,27870430-278705... 31 1.1
07_01_0789 - 6150257-6151046,6151167-6151390,6151816-6151991,615... 28 1.8
02_01_0254 - 1669461-1669590,1669833-1672318 30 2.0
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591 30 2.6
05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948 29 3.5
03_06_0552 - 34681736-34682281 29 3.5
01_07_0001 + 40324322-40324737,40325921-40326051,40326872-40327563 29 3.5
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 29 3.5
12_02_1111 - 26157796-26160330 29 6.1
10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539 28 8.0
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 28 8.0
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 31.9 bits (69), Expect = 0.65
Identities = 21/72 (29%), Positives = 26/72 (36%)
Frame = +3
Query: 294 WRNTFCTSASSACGLAQVLPDPPPPL*ERQARTGNTSVGALXXXXXXXXXXXXXQGAAET 473
+ N S S LA P PPPP RQA TGN+ + G
Sbjct: 341 YHNFLIRSILSNAYLATAPPPPPPP--SRQATTGNSQTSTVSVSNGAVANHGVMAGVMRG 398
Query: 474 PGFRTLRSKQER 509
P T ++ ER
Sbjct: 399 PALATREARFER 410
>11_02_0040 - 7665220-7666656
Length = 478
Score = 31.9 bits (69), Expect = 0.65
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -3
Query: 562 GTEWWGTLSAWCEASRARRSCLLLSVLKPGVSAAPWLGPLDQLGPPEEGSAPTEVFP 392
GT +W ++AW E +RAR L + P S P PL + PEE T V P
Sbjct: 177 GTAFWDMVNAWAEIARAR---LTTAAPPPPTSRPP---PLLKRWSPEEDDDATVVLP 227
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 459 GAAETPGFRTLRSKQERRALDASHHAESVPHHSVPSSIIA 578
G E+ R L + +R DA H SVP H VP+ +A
Sbjct: 665 GTLESDHHRALSKRIVKRLSDALHEGPSVPPHMVPTECMA 704
>05_07_0126 +
27869058-27869805,27869988-27870328,27870430-27870510,
27870978-27871073,27871152-27871307,27871575-27871721
Length = 522
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +3
Query: 456 QGAAETPGFRTLRSKQERRALDASHHAESVPHHSVPSSIIADIPSTLRAPCSNT 617
Q A PG RS E L H PH V SS + PST+ PC +T
Sbjct: 34 QVAVGVPGNTDFRSHYESINLQHQHVQNPYPHVGVASSSV--FPSTMYNPCIST 85
>07_01_0789 -
6150257-6151046,6151167-6151390,6151816-6151991,
6152778-6153801
Length = 737
Score = 27.9 bits (59), Expect(2) = 1.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 90 LGSRSAAIACANCNAHSGGAL-DGNAEHSLSKAVLTHVRSSEKP 218
+G+ + A AH+GGAL G+A+ S + A L S KP
Sbjct: 48 VGAALSDYASGEGEAHAGGALRSGSADSSAAAAALVTASSDGKP 91
Score = 21.0 bits (42), Expect(2) = 1.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 312 TSASSACGLAQVLPDPPPPL 371
T++S + +LP PPP L
Sbjct: 84 TASSDGKPVLAILPPPPPEL 103
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = -3
Query: 304 VLRHARKLPDKTQHLYKELNRLRRSA-ISLGFSELLTCVSTALERECSALPSNAPPECAL 128
+LRH LPD HL L+ + LGFS + R ALPS PP +
Sbjct: 65 LLRHLLSLPDPAPHLLALLSSSSSPLRLPLGFS-------LSAFRSLCALPSAPPPPTPV 117
Query: 127 QLAHAIAALRDPRTAFDIKHTL 62
+AAL++ R FD+ +L
Sbjct: 118 YNRLLLAALQEAR--FDLVESL 137
>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
Length = 573
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = -3
Query: 598 LKVEGMSAIILLGTEWWGTLSAWCEASRARRSCLLLSVLKPGVSAAPWLGPLDQLGPPEE 419
LK +SA +L+ + A+C+ASR C+L+ K A+ L P + P +
Sbjct: 24 LKRRLVSAPVLILPDQTKDFQAYCDASRQGLGCVLMQDGKVVSYASRQLRPHEGNYPTHD 83
Query: 418 GSAPTEVFPVRAWRSY 371
V ++ WR Y
Sbjct: 84 LELAAVVHALKIWRHY 99
>05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948
Length = 508
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 541 VFPTIPSQAVLLPTYLPP 594
VFPT+ S VLLP LPP
Sbjct: 445 VFPTVSSSGVLLPCVLPP 462
>03_06_0552 - 34681736-34682281
Length = 181
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = -3
Query: 190 STALERECSALPSNAPPE----CALQLAHAIAALRDPRTAFDIKHTLQPIAANIT 38
+T+ R + +P PPE C + A+A LR A +++H A +T
Sbjct: 77 ATSFVRNLAKMPGGMPPECLEGCVAKFQEAVAELRRSEAAMEVRHDAAGAKAWVT 131
>01_07_0001 + 40324322-40324737,40325921-40326051,40326872-40327563
Length = 412
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 279 GSLRAWRNTFCTSASSACGLAQVLPDPPPP 368
G+ +W+ T SA+SA A V P PPPP
Sbjct: 37 GAPTSWKTTTTVSAASAAP-AAVAPPPPPP 65
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +3
Query: 27 IDVNVMLAAIGCKVCL--ISKAVLGSRSAAIACANCNAHSGGALDGNA 164
IDV + +A + C CL + V A I C+ C G L G A
Sbjct: 382 IDVRIAVALLHCHACLQPLKPPVFKCDEAHIVCSGCRCGHHGQLCGGA 429
>12_02_1111 - 26157796-26160330
Length = 844
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 459 GAAETPGFRTLRSKQERRALDASHHAESVPHHSVPSSIIADI 584
GA E G+ LR+ ++R+ A ++ + HH+VP + +AD+
Sbjct: 729 GARENVGY--LRATEKRQFDAAQQASQYMTHHAVPGAAMADM 768
>10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539
Length = 702
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Frame = +2
Query: 332 RSCPSATRSSTATIRAPSSDRKYFSW-RTSFFRWSQLVKRAEPRCSR--DSWFQDT*EQT 502
R CP I AP R F W ++ F W + E + +W Q ++
Sbjct: 136 RHCPGKDEEIRCLIPAPPKYRTPFKWPQSRDFAWFNNIPHKELSIEKAVQNWIQVDGQRF 195
Query: 503 GAPCSGCFTPRG 538
P G PRG
Sbjct: 196 RFPGGGTMFPRG 207
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = -3
Query: 598 LKVEGMSAIILLGTEWWGTLSAWCEASRARRSCLLLSVLKPGVSAAPWLGPLDQLGPPEE 419
LK ++A +L+ + +C+ASR C+L+ K A+ L P + P +
Sbjct: 1117 LKKRLVTAPVLILPDSRKGFQVYCDASRLGLGCVLMQEGKVVAYASRQLRPHENNYPTHD 1176
Query: 418 GSAPTEVFPVRAWRSY 371
V ++ WR Y
Sbjct: 1177 LELAAVVHALKIWRHY 1192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,011,965
Number of Sequences: 37544
Number of extensions: 489617
Number of successful extensions: 1853
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1847
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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