Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_E07
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665           28   3.4  
12_01_0934 - 9273325-9273807,9273898-9274062,9274155-9274235,927...    27   7.9  
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726...    27   7.9  

>12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665
          Length = 366

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 467 GGWSLCPWTSVINLPIDERGLC 402
           G W++C W S +  P+  R LC
Sbjct: 218 GLWTMCEWRSSLRRPLPRRHLC 239


>12_01_0934 -
           9273325-9273807,9273898-9274062,9274155-9274235,
           9274347-9274475,9274590-9274661,9274758-9274826,
           9275143-9275514,9275590-9275703,9275729-9275848
          Length = 534

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 50  STSTTMPLPVQTVXGPL*LNQQKK 121
           +TS   PLPV+T  GP  LNQ++K
Sbjct: 431 TTSPMKPLPVETKRGP--LNQERK 452


>06_01_0944 +
           7264833-7265120,7265511-7265600,7265702-7265798,
           7265927-7265988,7266508-7266596,7266702-7266822,
           7266915-7267058,7267492-7267820,7268154-7268394,
           7269042-7269245,7271150-7271619,7272703-7272746,
           7273121-7273211,7273494-7273596,7273682-7273783,
           7274214-7274300,7274421-7274531
          Length = 890

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 370 C*CYLFALKNLHRPRSSIGKLITEVHGHNDQP 465
           C C   AL+ +H+ + +   L+  +HGH   P
Sbjct: 301 CRCNFHALRFVHKIQETGALLVERLHGHRPHP 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,974,660
Number of Sequences: 37544
Number of extensions: 209829
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)