Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_E04
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...   175   5e-45
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    80   4e-16
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   6.1  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   8.0  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   8.0  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score =  175 bits (426), Expect = 5e-45
 Identities = 84/129 (65%), Positives = 102/129 (79%), Gaps = 4/129 (3%)
 Frame = -1

Query: 705 AKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLM 526
           AK+QFK+R  ANNV+IIIPVP DADSP+F+T+ G V+Y PEQ A+ W+IK F GGKE+ M
Sbjct: 297 AKAQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFAGGKEFFM 356

Query: 525 RAHFGLPSVECE--EVDGKPPIQVKFEIPYFTTSGIQVRYLKIIE-KSGYQALPWVRYIT 355
           RA  GLPSV+ E  +V  K P+Q+KF IPYFTTSGIQVRYLKI E K  Y A+PWVRY+T
Sbjct: 357 RAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRYLKITEPKLNYHAMPWVRYVT 416

Query: 354 QNG-DYQLR 331
           QNG +Y +R
Sbjct: 417 QNGTEYSIR 425


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 79.8 bits (188), Expect = 4e-16
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
 Frame = -1

Query: 675 ANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVE 496
           ++++   IPVP +      +   G   Y P +N I W I  F G  E +  A   L +  
Sbjct: 329 SSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGETELIFYAEVELSNTT 388

Query: 495 CEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSG--YQALPWVRYITQNGDYQLR 331
            +++  KPPI + F I  FT+SG+ V+YL++ E S   Y+++ WVRY T+ G  ++R
Sbjct: 389 NQQIWAKPPISLDFNILMFTSSGLHVQYLRVSEPSNSKYKSIKWVRYSTRAGTCEIR 445


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 629 HQNSRQQLVALNIHQNKMRSHGQSNHFQEA 540
           +Q + QQL  L+I++ K RSH  S+  +E+
Sbjct: 62  YQRTLQQLNTLSIYELKNRSHFSSSPVEES 91


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +2

Query: 566 HVIAFCSGVYLTLPIVVLNFGE----SASAGTGIMISTLLAVDRLLN 694
           H++  C  +Y  L IVV  FG     S   G G+     +A+ R++N
Sbjct: 184 HLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAGV-FGNYVALQRMMN 229


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 462 LELGAFHQLPHIQQKADQSE 521
           L +  FH++PHIQQ   QS+
Sbjct: 108 LNMYGFHKVPHIQQGVLQSD 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,380
Number of Sequences: 5004
Number of extensions: 54970
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)