Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_E04
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 188 3e-48
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 184 6e-47
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 111 4e-25
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 50 2e-06
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 32 0.51
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587... 31 1.2
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 30 1.6
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 30 2.1
01_07_0202 + 41964448-41965104 28 6.3
04_04_1223 + 31851545-31852609,31854314-31854773,31856201-318562... 28 8.4
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 188 bits (459), Expect = 3e-48
Identities = 85/127 (66%), Positives = 103/127 (81%), Gaps = 2/127 (1%)
Frame = -1
Query: 705 AKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLM 526
A+SQFK RSTA NVEI +PVP+DA +P +T++GS Y PE++A+ W +KSFPGGK+Y+
Sbjct: 301 ARSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMC 360
Query: 525 RAHFGLPSVECEEV--DGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQ 352
RA F LPS+ EE + K PI+VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT
Sbjct: 361 RAEFSLPSITAEEAAPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITM 420
Query: 351 NGDYQLR 331
G+Y+LR
Sbjct: 421 AGEYELR 427
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 184 bits (448), Expect = 6e-47
Identities = 84/126 (66%), Positives = 101/126 (80%), Gaps = 2/126 (1%)
Frame = -1
Query: 702 KSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMR 523
+SQFK RSTA NVEI +PVP D+ +P +T++GS Y PE++A+ W IKSFPGGKEY+ R
Sbjct: 277 RSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYMCR 336
Query: 522 AHFGLPSVECEE--VDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQN 349
A F LPS+ E+ + K PI+VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT
Sbjct: 337 AEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 396
Query: 348 GDYQLR 331
G+Y+LR
Sbjct: 397 GEYELR 402
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 111 bits (268), Expect = 4e-25
Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Frame = -1
Query: 702 KSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMR 523
KS F + A V + +PVP F+TT G KY +++ W I+ FPG E M
Sbjct: 313 KSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLVWKIRKFPGQTEATMS 372
Query: 522 AHFGLPSVECEEVD-GKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNG 346
A L S E+ +PPIQ++F++P FT SG++VR+LK+ EKSGY + WVRYIT+ G
Sbjct: 373 AEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITRAG 432
Query: 345 DYQLR 331
Y++R
Sbjct: 433 SYEIR 437
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = -1
Query: 471 PIQVKFEIPYFTTSGIQVRYLKIIEKS-GYQALPWVRYITQNGDYQLR 331
P+ + F IP + TS +QVRYL+I +KS Y WVRY+TQ Y R
Sbjct: 371 PVNMNFTIPMYNTSKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVAR 418
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 672 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 559
+NV I IP+PA ++P + G KY + + WSI
Sbjct: 702 HNVVISIPLPALREAPSVRQIDGEWKYDSRNSVLEWSI 739
>05_03_0443 +
14057080-14057201,14058566-14058698,14058758-14058797,
14059175-14059398,14059904-14059976,14060364-14060614,
14060892-14061060,14061307-14061611,14062023-14062209,
14062311-14062464,14063186-14063248,14063337-14063433,
14063530-14063619
Length = 635
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 672 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 559
+NV I IP+PA ++P + G +Y + + WSI
Sbjct: 528 HNVVISIPLPALREAPSVRQIDGEWRYDSRNSVLEWSI 565
>08_02_0433 -
17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 672 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 559
++V I IP+PA ++P+ + G KY + + WSI
Sbjct: 568 HSVIISIPLPALREAPRVRQIDGEWKYDSRNSVLEWSI 605
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 672 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 559
+NV I IP+PA ++P + G +Y + + WSI
Sbjct: 442 HNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSI 479
>01_07_0202 + 41964448-41965104
Length = 218
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 563 DHVIAFCSGVYLTLPIVVLNFGESASAG 646
DHV+ Y+ LPI V++ GE AG
Sbjct: 51 DHVVCAADSFYVGLPIPVVSAGEELMAG 78
>04_04_1223 +
31851545-31852609,31854314-31854773,31856201-31856250,
31856333-31856463,31856569-31856665,31856759-31856950,
31857121-31857123
Length = 665
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 543 GKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALP 373
GKE L+RA + L S+ + P YFT + LK +EKS + P
Sbjct: 78 GKERLVRAKYSL-SLVARDGRASPLAGDTLRSHYFTPTSRSADVLKFVEKSNLSSSP 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,683,198
Number of Sequences: 37544
Number of extensions: 304256
Number of successful extensions: 531
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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