Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_D23
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 0.91
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 28 1.2
SPAC664.08c |||traub transciption factor family protein |Schizos... 27 2.8
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 4.8
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 6.4
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 25 8.5
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|... 25 8.5
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 8.5
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 25 8.5
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 0.91
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -1
Query: 600 RRLEHEESEDKITVTDKSXNSXTHSGEDSKNREKLKSDVENEGNLVV---KLVEYETDPE 430
RR + +E ED++ +KS N + + ED+KN + + + N VV KL++ +T
Sbjct: 23 RRRQFQE-EDQLRRNNKSSNKLSQNEEDAKNMDSVVQKLNELQNNVVAFQKLLQEKTPLS 81
Query: 429 VLQ 421
+Q
Sbjct: 82 SIQ 84
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 552 KSXNSXTHSGEDSKNRE--KLKSDVENEGNLVVKLVEYETD 436
K NS + E+S +E KSD E E ++ K EY+ D
Sbjct: 87 KELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDED 127
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 2.8
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = -1
Query: 444 ETDPEVLQR----RQKQIDYGKNTVGYQNYVQQIPLNKRTKELPKTPDKYLKYSRRSWDM 277
E DPE L+ R+ + +T+G ++YV R+K+ P+ K+ K + S
Sbjct: 20 ERDPEALEDAFSDREDSSEEENDTLGREHYVDVSESKLRSKQAPQLDPKF-KGRKTSRQE 78
Query: 276 LIKLWRKNLHEFDPNFGEVKKEC-NDA 199
L+ N P+ E +E NDA
Sbjct: 79 LLNSGSLNSQSSSPSEEEDSEEDENDA 105
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/54 (22%), Positives = 25/54 (46%)
Frame = -1
Query: 345 KRTKELPKTPDKYLKYSRRSWDMLIKLWRKNLHEFDPNFGEVKKECNDANKKVN 184
K+ +E K K + + W + WRK++ E+ + E +K ++ K +
Sbjct: 166 KKAREEDKAEWKKAREEDKEWRNSMDEWRKSMDEWRKSMDEWRKSMDEWRKSTD 219
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 6.4
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Frame = -1
Query: 600 RRLEHEESEDKITVTDKSXNSXTHSGEDSKNREKLKSDVE--NEGNLV-VKLVEYE---- 442
RRL EE+ VT + H + K REK + +VE N +L +++V+
Sbjct: 61 RRLYTEENVQWRPVTAEEWKMDLHRKNERKKREKERKEVELSNRKHLANIRVVQKNLAYV 120
Query: 441 --TDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKR 340
P+V + G G + +I +NK+
Sbjct: 121 NGLSPKVANEENINVLKGPEYFGQYGKIIKIAINKK 156
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 324 KTPDKYLKYSRRSWDMLIKLWRKNLHEFDPNFGEVKKECND 202
K D Y K + + L+ W++ + + D +F EVK+ +
Sbjct: 275 KDNDLYRKETISVREALLGNWKRKIQKLDGSFMEVKRSAGE 315
>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = +2
Query: 56 GVVCDIIYTCVIYLYNTYMYIVGLNI 133
G+ C I++ + Y Y T+ G I
Sbjct: 126 GITCPILFIAIFYFYETWTKACGKGI 151
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = -1
Query: 591 EHEESEDKITVTDKSXNSXTHSGE----DSKNREKLKSDVENEG--NLVVKLVEYETDPE 430
+H++ E+ + D N + D + E + S +N+ + +K V+Y+
Sbjct: 214 DHDDGENSDSKLDNLRNYIVSLNQKRKKDEADAESVLSSDDNDSIEEISIKKVKYDPHET 273
Query: 429 VLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTK 334
+ I + T+ + + IP+N++ K
Sbjct: 274 NKESEYNLIGSSEKTIDITDLLDSIPMNEQLK 305
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 444 ETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTKELPKTPDKYLK 301
ET+ + RR K+ID NT + Y+++ + + T+ K + LK
Sbjct: 263 ETEASQVMRRFKEIDPSFNTEHFLQYLREYIVPEVTEAYVKGDKEVLK 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,936
Number of Sequences: 5004
Number of extensions: 44234
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -