Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_D23
(600 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71188-1|CAA94918.1| 270|Homo sapiens histone RNA hairpin-bindi... 97 3e-20
U75679-1|AAB97091.1| 270|Homo sapiens histone stem-loop binding... 97 3e-20
BT007433-1|AAP36101.1| 270|Homo sapiens stem-loop (histone) bin... 97 3e-20
BC015703-1|AAH15703.1| 270|Homo sapiens stem-loop (histone) bin... 97 3e-20
BC014908-1|AAH14908.1| 270|Homo sapiens stem-loop (histone) bin... 97 3e-20
X66397-1|CAA47021.1| 2349|Homo sapiens Tpr protein. 36 0.082
X63105-1|CAA44819.1| 726|Homo sapiens Tpr protein. 36 0.082
U69668-1|AAB48030.1| 2363|Homo sapiens Tpr protein. 36 0.082
BC094764-1|AAH94764.1| 692|Homo sapiens TPR protein protein. 36 0.082
BC016514-1|AAH16514.1| 687|Homo sapiens TPR protein protein. 36 0.082
AL596220-1|CAI13119.1| 2363|Homo sapiens translocated promoter r... 36 0.082
AL133553-3|CAI17859.1| 2363|Homo sapiens translocated promoter r... 36 0.082
X94208-1|CAA63904.1| 85|Homo sapiens TPR protein protein. 31 3.1
X62947-1|CAA44719.1| 503|Homo sapiens 55 kd protein protein. 30 7.1
BC131515-1|AAI31516.1| 632|Homo sapiens GOLGA6 protein protein. 29 9.4
AF266285-1|AAF72535.1| 693|Homo sapiens golgin-like protein pro... 29 9.4
AF263742-1|AAF72196.1| 693|Homo sapiens golgin-like protein pro... 29 9.4
>Z71188-1|CAA94918.1| 270|Homo sapiens histone RNA hairpin-binding
protein protein.
Length = 270
Score = 97.5 bits (232), Expect = 3e-20
Identities = 42/94 (44%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Frame = -1
Query: 513 KNREKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTK 334
+ R+ +++ ++ ++ETD VL RRQKQI+YGKNT+ Y Y++++P + R
Sbjct: 106 RERKSSSGSSDSKESMSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQP 165
Query: 333 EL-PKTPDKYLKYSRRSWDMLIKLWRKNLHEFDP 235
+ PKTP+K+ KYSRRSWD IKLW+ LH +DP
Sbjct: 166 GIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDP 199
>U75679-1|AAB97091.1| 270|Homo sapiens histone stem-loop binding
protein protein.
Length = 270
Score = 97.5 bits (232), Expect = 3e-20
Identities = 42/94 (44%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Frame = -1
Query: 513 KNREKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTK 334
+ R+ +++ ++ ++ETD VL RRQKQI+YGKNT+ Y Y++++P + R
Sbjct: 106 RERKSSSGSSDSKESMSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQP 165
Query: 333 EL-PKTPDKYLKYSRRSWDMLIKLWRKNLHEFDP 235
+ PKTP+K+ KYSRRSWD IKLW+ LH +DP
Sbjct: 166 GIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDP 199
>BT007433-1|AAP36101.1| 270|Homo sapiens stem-loop (histone)
binding protein protein.
Length = 270
Score = 97.5 bits (232), Expect = 3e-20
Identities = 42/94 (44%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Frame = -1
Query: 513 KNREKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTK 334
+ R+ +++ ++ ++ETD VL RRQKQI+YGKNT+ Y Y++++P + R
Sbjct: 106 RERKSSSGSSDSKESMSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQP 165
Query: 333 EL-PKTPDKYLKYSRRSWDMLIKLWRKNLHEFDP 235
+ PKTP+K+ KYSRRSWD IKLW+ LH +DP
Sbjct: 166 GIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDP 199
>BC015703-1|AAH15703.1| 270|Homo sapiens stem-loop (histone)
binding protein protein.
Length = 270
Score = 97.5 bits (232), Expect = 3e-20
Identities = 42/94 (44%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Frame = -1
Query: 513 KNREKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTK 334
+ R+ +++ ++ ++ETD VL RRQKQI+YGKNT+ Y Y++++P + R
Sbjct: 106 RERKSSSGSSDSKESMSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQP 165
Query: 333 EL-PKTPDKYLKYSRRSWDMLIKLWRKNLHEFDP 235
+ PKTP+K+ KYSRRSWD IKLW+ LH +DP
Sbjct: 166 GIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDP 199
>BC014908-1|AAH14908.1| 270|Homo sapiens stem-loop (histone)
binding protein protein.
Length = 270
Score = 97.5 bits (232), Expect = 3e-20
Identities = 42/94 (44%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Frame = -1
Query: 513 KNREKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTK 334
+ R+ +++ ++ ++ETD VL RRQKQI+YGKNT+ Y Y++++P + R
Sbjct: 106 RERKSSSGSSDSKESMSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQP 165
Query: 333 EL-PKTPDKYLKYSRRSWDMLIKLWRKNLHEFDP 235
+ PKTP+K+ KYSRRSWD IKLW+ LH +DP
Sbjct: 166 GIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDP 199
>X66397-1|CAA47021.1| 2349|Homo sapiens Tpr protein.
Length = 2349
Score = 36.3 bits (80), Expect = 0.082
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -1
Query: 582 ESEDKITVTDKSXNSXTHSGEDSKN-REKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQ 406
E D I ++ + ED K EKLK +G L +KL E + ++ R+K+
Sbjct: 123 EKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKR 182
Query: 405 IDYGKNTVGYQNYVQQIPLNKRTKEL 328
++ K + QN L +T EL
Sbjct: 183 LEQEKELLHSQNTWLNTELKTKTDEL 208
>X63105-1|CAA44819.1| 726|Homo sapiens Tpr protein.
Length = 726
Score = 36.3 bits (80), Expect = 0.082
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -1
Query: 582 ESEDKITVTDKSXNSXTHSGEDSKN-REKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQ 406
E D I ++ + ED K EKLK +G L +KL E + ++ R+K+
Sbjct: 123 EKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKR 182
Query: 405 IDYGKNTVGYQNYVQQIPLNKRTKEL 328
++ K + QN L +T EL
Sbjct: 183 LEQEKELLHSQNTWLNTELKTKTDEL 208
>U69668-1|AAB48030.1| 2363|Homo sapiens Tpr protein.
Length = 2363
Score = 36.3 bits (80), Expect = 0.082
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -1
Query: 582 ESEDKITVTDKSXNSXTHSGEDSKN-REKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQ 406
E D I ++ + ED K EKLK +G L +KL E + ++ R+K+
Sbjct: 123 EKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKR 182
Query: 405 IDYGKNTVGYQNYVQQIPLNKRTKEL 328
++ K + QN L +T EL
Sbjct: 183 LEQEKELLHSQNTWLNTELKTKTDEL 208
>BC094764-1|AAH94764.1| 692|Homo sapiens TPR protein protein.
Length = 692
Score = 36.3 bits (80), Expect = 0.082
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -1
Query: 582 ESEDKITVTDKSXNSXTHSGEDSKN-REKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQ 406
E D I ++ + ED K EKLK +G L +KL E + ++ R+K+
Sbjct: 123 EKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKR 182
Query: 405 IDYGKNTVGYQNYVQQIPLNKRTKEL 328
++ K + QN L +T EL
Sbjct: 183 LEQEKELLHSQNTWLNTELKTKTDEL 208
>BC016514-1|AAH16514.1| 687|Homo sapiens TPR protein protein.
Length = 687
Score = 36.3 bits (80), Expect = 0.082
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -1
Query: 582 ESEDKITVTDKSXNSXTHSGEDSKN-REKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQ 406
E D I ++ + ED K EKLK +G L +KL E + ++ R+K+
Sbjct: 123 EKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKR 182
Query: 405 IDYGKNTVGYQNYVQQIPLNKRTKEL 328
++ K + QN L +T EL
Sbjct: 183 LEQEKELLHSQNTWLNTELKTKTDEL 208
>AL596220-1|CAI13119.1| 2363|Homo sapiens translocated promoter
region (to activated MET oncogene) protein.
Length = 2363
Score = 36.3 bits (80), Expect = 0.082
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -1
Query: 582 ESEDKITVTDKSXNSXTHSGEDSKN-REKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQ 406
E D I ++ + ED K EKLK +G L +KL E + ++ R+K+
Sbjct: 123 EKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKR 182
Query: 405 IDYGKNTVGYQNYVQQIPLNKRTKEL 328
++ K + QN L +T EL
Sbjct: 183 LEQEKELLHSQNTWLNTELKTKTDEL 208
>AL133553-3|CAI17859.1| 2363|Homo sapiens translocated promoter
region (to activated MET oncogene) protein.
Length = 2363
Score = 36.3 bits (80), Expect = 0.082
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -1
Query: 582 ESEDKITVTDKSXNSXTHSGEDSKN-REKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQ 406
E D I ++ + ED K EKLK +G L +KL E + ++ R+K+
Sbjct: 123 EKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKR 182
Query: 405 IDYGKNTVGYQNYVQQIPLNKRTKEL 328
++ K + QN L +T EL
Sbjct: 183 LEQEKELLHSQNTWLNTELKTKTDEL 208
>X94208-1|CAA63904.1| 85|Homo sapiens TPR protein protein.
Length = 85
Score = 31.1 bits (67), Expect = 3.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 504 EKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTKEL 328
EKLK +G L +KL E + ++ R+K+++ K + QN L +T EL
Sbjct: 7 EKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDEL 65
>X62947-1|CAA44719.1| 503|Homo sapiens 55 kd protein protein.
Length = 503
Score = 29.9 bits (64), Expect = 7.1
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 582 ESEDKITVTDKSXNSXTHSGEDSKN-REKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQ 406
E D I ++ + ED K EKLK +G L +KL E + ++ R+K+
Sbjct: 123 EKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKR 182
Query: 405 IDYGK 391
++ K
Sbjct: 183 LEQEK 187
>BC131515-1|AAI31516.1| 632|Homo sapiens GOLGA6 protein protein.
Length = 632
Score = 29.5 bits (63), Expect = 9.4
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = -1
Query: 597 RLEHEESEDKITVTDKSXNSXTHSGEDSKNREKLKSDV--ENEGNLVVKLVEYETDPEVL 424
R E E E K+ ++ + + ++ K R + + ++ E E V + E L
Sbjct: 308 RQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLCEQNERL 367
Query: 423 QRRQKQIDYGKNTVGYQNYVQQIPLNKRTKELPKTPDKYLKYSRRSWDMLIKLWRK 256
+ +QK + G + Q+ L K+ + L K ++ K +R WD +LW+K
Sbjct: 368 REQQKTLQ----EQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKK 419
>AF266285-1|AAF72535.1| 693|Homo sapiens golgin-like protein
protein.
Length = 693
Score = 29.5 bits (63), Expect = 9.4
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = -1
Query: 597 RLEHEESEDKITVTDKSXNSXTHSGEDSKNREKLKSDV--ENEGNLVVKLVEYETDPEVL 424
R E E E K+ ++ + + ++ K R + + ++ E E V + E L
Sbjct: 308 RQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLCEQNERL 367
Query: 423 QRRQKQIDYGKNTVGYQNYVQQIPLNKRTKELPKTPDKYLKYSRRSWDMLIKLWRK 256
+ +QK + G + Q+ L K+ + L K ++ K +R WD +LW+K
Sbjct: 368 REQQKTLQ----EQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKK 419
>AF263742-1|AAF72196.1| 693|Homo sapiens golgin-like protein
protein.
Length = 693
Score = 29.5 bits (63), Expect = 9.4
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = -1
Query: 597 RLEHEESEDKITVTDKSXNSXTHSGEDSKNREKLKSDV--ENEGNLVVKLVEYETDPEVL 424
R E E E K+ ++ + + ++ K R + + ++ E E V + E L
Sbjct: 308 RQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLCEQNERL 367
Query: 423 QRRQKQIDYGKNTVGYQNYVQQIPLNKRTKELPKTPDKYLKYSRRSWDMLIKLWRK 256
+ +QK + G + Q+ L K+ + L K ++ K +R WD +LW+K
Sbjct: 368 REQQKTLQ----EQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKK 419
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,224,834
Number of Sequences: 237096
Number of extensions: 1308344
Number of successful extensions: 2687
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2682
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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