Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_D23
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical pr... 73 1e-13
Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA hai... 73 1e-13
AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone stem-... 73 1e-13
U50066-1|AAA93437.2| 378|Caenorhabditis elegans Resistance to i... 29 2.5
AF077539-1|AAK84580.2| 550|Caenorhabditis elegans Hypothetical ... 29 3.3
AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical... 29 3.3
Z78198-11|CAH04700.1| 579|Caenorhabditis elegans Hypothetical p... 28 4.4
Z78198-10|CAB01568.1| 569|Caenorhabditis elegans Hypothetical p... 28 4.4
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un... 28 4.4
AF083654-1|AAC32865.1| 569|Caenorhabditis elegans putative pota... 28 4.4
Z73103-1|CAA97424.1| 117|Caenorhabditis elegans Hypothetical pr... 28 5.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 5.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 5.9
AF016442-9|AAB65921.1| 714|Caenorhabditis elegans Hypothetical ... 28 5.9
AF022974-9|AAC48035.3| 566|Caenorhabditis elegans Hypothetical ... 27 7.7
AF016668-2|AAO12442.1| 140|Caenorhabditis elegans Hypothetical ... 27 7.7
>Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical
protein R06F6.1 protein.
Length = 367
Score = 73.3 bits (172), Expect = 1e-13
Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = -1
Query: 441 TDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTK-ELPKTPDKYLKYSRRSWDMLIKL 265
TD VL+RR ++ID K YQ Y ++PL R K + P+TP+K + +SRRSWD IK
Sbjct: 207 TDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDRIKGQHPRTPNKLINFSRRSWDTQIKK 266
Query: 264 WRKNLHEF 241
W+++L+E+
Sbjct: 267 WKRSLYEY 274
>Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA
hairpin-binding protein protein.
Length = 367
Score = 73.3 bits (172), Expect = 1e-13
Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = -1
Query: 441 TDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTK-ELPKTPDKYLKYSRRSWDMLIKL 265
TD VL+RR ++ID K YQ Y ++PL R K + P+TP+K + +SRRSWD IK
Sbjct: 207 TDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDRIKGQHPRTPNKLINFSRRSWDTQIKK 266
Query: 264 WRKNLHEF 241
W+++L+E+
Sbjct: 267 WKRSLYEY 274
>AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone
stem-loop binding proteinCDL-1 protein.
Length = 367
Score = 73.3 bits (172), Expect = 1e-13
Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = -1
Query: 441 TDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTK-ELPKTPDKYLKYSRRSWDMLIKL 265
TD VL+RR ++ID K YQ Y ++PL R K + P+TP+K + +SRRSWD IK
Sbjct: 207 TDEAVLKRRSREIDRAKEKAVYQRYTSEVPLRDRIKGQHPRTPNKLINFSRRSWDTQIKK 266
Query: 264 WRKNLHEF 241
W+++L+E+
Sbjct: 267 WKRSLYEY 274
>U50066-1|AAA93437.2| 378|Caenorhabditis elegans Resistance to
inhibitors of cholinesteraseprotein 3 protein.
Length = 378
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -1
Query: 591 EHEESEDKITVTDKSXNSXTHSGEDSKNREKLKSDVENEGNLVVKLVEYETDPE 430
E EE E+++ KS +S G+ KNR K S+ E+EG + V + + E
Sbjct: 297 EIEEEEEEVKPVKKSKSSSQSVGK-RKNRPKSTSEEEDEGEEESRKVAEDAEEE 349
>AF077539-1|AAK84580.2| 550|Caenorhabditis elegans Hypothetical
protein T25D3.4 protein.
Length = 550
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 258 FSKALLTYPMTAYYISSIYLESLVVL 335
F+ +L+T P YIS +Y +SLVVL
Sbjct: 205 FAASLVTSPALGAYISEVYGDSLVVL 230
>AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical
protein Y18H1A.9 protein.
Length = 488
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 318 PDKYLKYSRRSWDMLIKLWRKN 253
PD Y +YSR S D I+LWRKN
Sbjct: 228 PDGY-EYSRSSNDPEIRLWRKN 248
>Z78198-11|CAH04700.1| 579|Caenorhabditis elegans Hypothetical
protein F55C5.3b protein.
Length = 579
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/51 (29%), Positives = 31/51 (60%)
Frame = -1
Query: 558 TDKSXNSXTHSGEDSKNREKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQ 406
+DK+ ++ ++SK ++K K + + NL V+ + + DPEVL ++K+
Sbjct: 50 SDKTSDTKVVIEDESKKKKKKK---KKDKNLDVEELPQQEDPEVLAAKEKE 97
>Z78198-10|CAB01568.1| 569|Caenorhabditis elegans Hypothetical
protein F55C5.3a protein.
Length = 569
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/51 (29%), Positives = 31/51 (60%)
Frame = -1
Query: 558 TDKSXNSXTHSGEDSKNREKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQ 406
+DK+ ++ ++SK ++K K + + NL V+ + + DPEVL ++K+
Sbjct: 50 SDKTSDTKVVIEDESKKKKKKK---KKDKNLDVEELPQQEDPEVLAAKEKE 97
>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 6 protein.
Length = 2098
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -2
Query: 260 EKIYMNSIPTLEK*RKNAMMLIRKLMMMTLPI-RNNK*IYILDRYLSPQYT 111
E +Y+ +PTL K KN + + K M ++L + NNK + ++D Y + YT
Sbjct: 1540 ENVYV--LPTLVKPSKNTLQIFPKDMDLSLDLFNNNKQVTVVD-YNAEPYT 1587
>AF083654-1|AAC32865.1| 569|Caenorhabditis elegans putative
potassium channel subunitn2P24 protein.
Length = 569
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/51 (29%), Positives = 31/51 (60%)
Frame = -1
Query: 558 TDKSXNSXTHSGEDSKNREKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQ 406
+DK+ ++ ++SK ++K K + + NL V+ + + DPEVL ++K+
Sbjct: 50 SDKTSDTKVVIEDESKKKKKKK---KKDKNLDVEELPQQEDPEVLAAKEKE 97
>Z73103-1|CAA97424.1| 117|Caenorhabditis elegans Hypothetical
protein C08F8.1 protein.
Length = 117
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 561 VTDKSXNSXTHSGEDSKNREKLKSDVENEGNLVVKLVEYETD-PEVLQRRQ 412
+TDK H E +++EK+++ + + L LVE ET+ E++Q R+
Sbjct: 67 LTDKPAEISRHEAEAKQSKEKIEAIEKQKDYLEKGLVEAETNLRELIQSRR 117
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = -1
Query: 504 EKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTKELP 325
EKLK + + + + L+E + + E L + Q +++ + ++ +K+T+E P
Sbjct: 13570 EKLKLEEQKKKAAEIALIEIQKEQEKLAQEQSRLEDEAKKSAEKQKLESETKSKQTEEAP 13629
Query: 324 K 322
K
Sbjct: 13630 K 13630
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = -1
Query: 504 EKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTKELP 325
EKLK + + + + L+E + + E L + Q +++ + ++ +K+T+E P
Sbjct: 13570 EKLKLEEQKKKAAEIALIEIQKEQEKLAQEQSRLEDEAKKSAEKQKLESETKSKQTEEAP 13629
Query: 324 K 322
K
Sbjct: 13630 K 13630
>AF016442-9|AAB65921.1| 714|Caenorhabditis elegans Hypothetical
protein K12B6.8 protein.
Length = 714
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = -1
Query: 507 REKLKSD--VENEGNLVVKLVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTK 334
+E+LK++ +E G + KL+ TDP V + +++ K T ++ Y++ + ++
Sbjct: 554 QERLKNEKPLEKAGTMANKLIAMSTDPAVKSSAEYELE--KITAKFKVYIKMV--DRHLA 609
Query: 333 ELPKTPD 313
L K P+
Sbjct: 610 MLQKNPN 616
>AF022974-9|AAC48035.3| 566|Caenorhabditis elegans Hypothetical
protein F26G5.1 protein.
Length = 566
Score = 27.5 bits (58), Expect = 7.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 279 MLIKLWRKNLHEFDPNF 229
+L+KLWR +H++ NF
Sbjct: 166 LLLKLWRHTIHQYQENF 182
>AF016668-2|AAO12442.1| 140|Caenorhabditis elegans Hypothetical
protein F36H9.8 protein.
Length = 140
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 324 KTPDKYLKYSRRSWDMLIKLWRKNLHEFDPNFGEVKKE 211
+T +K + +S R++ + + + KN H FD NF K+
Sbjct: 47 RTREKQILFSVRNFSIFLLFFFKNDHRFDFNFSICNKK 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,185,944
Number of Sequences: 27780
Number of extensions: 235976
Number of successful extensions: 713
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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