Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D17
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    27   1.5  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   3.4  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   7.8  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -3

Query: 455 LVTLTVFFGP---RNFFKMPSCVKRHCRNYTRKT 363
           L T+TVF G      FF +P C++ H R +   T
Sbjct: 9   LATVTVFVGLCGINRFFTLPKCIRYHFRYFACHT 42


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 314 NLKLILSHDLSSLDFWESFLYSFYSV 391
           N  +++ HDLS LD+   F+   Y V
Sbjct: 270 NYVIVVEHDLSVLDYLSDFVCVLYGV 295


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 338 DLSSLDFWESFLYSFY 385
           +++ +DFWES +YS Y
Sbjct: 279 EIAKVDFWESEVYSKY 294


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 225 PSVREMSVKIKKSNVTERTFP*YCLHISSQ 136
           P+V  +S  + +SN T  TFP    +ISSQ
Sbjct: 539 PNVVPLSRGLTQSNETSNTFPAASSNISSQ 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,279
Number of Sequences: 5004
Number of extensions: 34321
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)