Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D17
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    27   0.14 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   0.97 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   6.9  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 104 NIKFVNSFLGCCELMCRQYHGNVLSVT--LLFLILTDISLTL 223
           +I FV SF GCC  + R+ H   ++    LLF++L  I++ +
Sbjct: 60  SIIFVISFFGCCGAI-RESHCMTITFASFLLFILLVQIAVAV 100


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 146 MCRQYHGNVLSVTLLFLILTDISLTLGD 229
           +C +++GN+ +V   +L+L   S+ +GD
Sbjct: 125 VCGRFYGNIQTVXNNWLLLEGHSIGIGD 152


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 267 LLKKARVRRHKLRSPSVREMSVK 199
           LL++A++RR++ R+P   + + K
Sbjct: 170 LLRRAQIRRNERRTPDPHDETAK 192


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = +3

Query: 327 YFRMTCHP*TFGSLSCIVSTVSLNTGRHFKEISRTKKHSQRY 452
           Y+  +  P  FG   CI+ + +  T  +   ++ T    +RY
Sbjct: 112 YYIWSHFPYVFGEAFCIIQSFAAETSANATVLTITAFTVERY 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,651
Number of Sequences: 438
Number of extensions: 2229
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)