Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D16
         (824 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC127215-1|AAI27216.1|   92|Homo sapiens MED26 protein protein.        33   1.3  
BC110430-1|AAI10431.1|  600|Homo sapiens mediator complex subuni...    32   2.9  
AF104253-1|AAD12722.1|  600|Homo sapiens transcriptional co-acti...    32   2.9  

>BC127215-1|AAI27216.1|   92|Homo sapiens MED26 protein protein.
          Length = 92

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 17/53 (32%), Positives = 31/53 (58%)
 Frame = -3

Query: 753 RNLFAFIKLMHALRKY*ITRETVDKTNITELISCH*FRNVNSPLLFRGKNRQG 595
           RN+ A ++++ +L KY IT+E +++T + +LI+    +  N  L  R K   G
Sbjct: 26  RNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLPG 78


>BC110430-1|AAI10431.1|  600|Homo sapiens mediator complex subunit
           26 protein.
          Length = 600

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -3

Query: 753 RNLFAFIKLMHALRKY*ITRETVDKTNITELISCH*FRNVNSPLLFRGK 607
           RN+ A ++++ +L KY IT+E +++T + +LI+    +  N  L  R K
Sbjct: 26  RNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAK 74


>AF104253-1|AAD12722.1|  600|Homo sapiens transcriptional
           co-activator CRSP70 protein.
          Length = 600

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -3

Query: 753 RNLFAFIKLMHALRKY*ITRETVDKTNITELISCH*FRNVNSPLLFRGK 607
           RN+ A ++++ +L KY IT+E +++T + +LI+    +  N  L  R K
Sbjct: 26  RNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAK 74


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,593,826
Number of Sequences: 237096
Number of extensions: 2046538
Number of successful extensions: 1952
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1952
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)