Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_D16
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   2.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   2.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   2.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   4.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.9  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 287 NSVILKHCRDNFVILYFSIQRTGKAMTFKFNFVGG*ILIS 168
           N++  + C + +V + F+IQ   + + + FN +   +LIS
Sbjct: 170 NTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 287 NSVILKHCRDNFVILYFSIQRTGKAMTFKFNFVGG*ILIS 168
           N++  + C + +V + F+IQ   + + + FN +   +LIS
Sbjct: 170 NTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 287 NSVILKHCRDNFVILYFSIQRTGKAMTFKFNFVGG*ILIS 168
           N++  + C + +V + F+IQ   + + + FN +   +LIS
Sbjct: 170 NTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 287 NSVILKHCRDNFVILYFSIQRTGKAMTFKFNFVGG*ILIS 168
           N++  + C + +V + F+IQ   + + + FN +   +LIS
Sbjct: 170 NTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 287 NSVILKHCRDNFVILYFSIQRTGKAMTFKFNFVGG*ILIS 168
           N++  + C + +V + F+IQ   + + + FN +   +LIS
Sbjct: 170 NTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 287 NSVILKHCRDNFVILYFSIQRTGKAMTFKFNFVGG*ILIS 168
           N++  + C + +V + F+IQ   + + + FN +   +LIS
Sbjct: 170 NTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 287 NSVILKHCRDNFVILYFSIQRTGKAMTFKFNFVGG*ILIS 168
           N++  + C + +V + F+IQ   + + + FN +   +LIS
Sbjct: 238 NTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 277


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 287 NSVILKHCRDNFVILYFSIQRTGKAMTFKFNFVGG*ILIS 168
           N++  + C + +V + F+IQ   + + + FN +   +LIS
Sbjct: 238 NTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 277


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 120 VDYR*PTWRDNILEKSLGQPQ 58
           VD   PTW  NIL+  +GQ Q
Sbjct: 121 VDRDVPTWEVNILKSIVGQLQ 141


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 246 NDKIVAAVL*NHRVSHMTIGV 308
           +D+++ A L  HR+ H  IG+
Sbjct: 419 HDELLGADLVEHRIRHSQIGI 439


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 120 RLMKIPKVLFVMAHFY 167
           +LMK+P +  VM H Y
Sbjct: 153 KLMKLPPMYEVMPHLY 168


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 534 KPNSKYYFTSGGASCTSRY 590
           K + K+Y  SGG  C   Y
Sbjct: 235 KGDGKWYLPSGGCHCKPGY 253


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 120 RLMKIPKVLFVMAHFY 167
           +LMK+P +  VM H Y
Sbjct: 153 KLMKLPPMYEVMPHLY 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,584
Number of Sequences: 438
Number of extensions: 4824
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)