Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_D15
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0882 + 32477306-32478189,32478735-32478819,32478930-324789... 34 0.045
02_02_0500 - 10993675-10994067,10994434-10995738 33 0.14
06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866 31 0.56
06_02_0244 - 13445023-13445400,13445495-13446823 30 0.97
04_04_1523 - 34148407-34150224 29 1.7
09_04_0500 - 18120287-18122233 29 2.3
04_04_0982 - 29914146-29914187,29914839-29915168 27 5.2
01_06_0654 + 30911416-30912071,30913664-30914348 27 5.2
01_07_0224 - 42121011-42122486 27 6.9
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 27 9.1
08_01_0690 - 6106689-6106988,6107278-6107391,6107528-6107596,610... 27 9.1
04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748 27 9.1
02_04_0446 - 22995503-22995655,22995775-22995912 27 9.1
>02_05_0882 +
32477306-32478189,32478735-32478819,32478930-32478992,
32479177-32479334,32479460-32479535,32479622-32479681,
32479978-32480082,32480450-32480629
Length = 536
Score = 34.3 bits (75), Expect = 0.045
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 100 DYRSTIVFDNRTITVCKLIVTINYSRISTTRGPQVFINPSPRPRFLRSTTRWILG 264
+ R +V + T + + +R ST+R + I+PSP RF R+ T W+ G
Sbjct: 224 EIRGEVVVEATRETTGASALVVEATRESTSRDIEHLISPSPHRRFRRTITSWLKG 278
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 32.7 bits (71), Expect = 0.14
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 334 PQFSELVLQAETAIDNGIFPERIYQGSSGSYFVKNAGG 221
P E++ + I+NG P +GS G YF+K++ G
Sbjct: 241 PAVMEMIYSTISGIENGYLPVMSTEGSGGVYFMKDSSG 278
>06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866
Length = 785
Score = 30.7 bits (66), Expect = 0.56
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 361 MVTPFQCDDPQFSELVLQAETAIDNGIFPERIYQGSSGSYFVKNAGG 221
+V P +C + +LV AI NG+ P + G G+Y+ +N+ G
Sbjct: 273 LVCPSRCS--RTKQLVKDVARAIRNGVDPIPVNSGLGGAYYFRNSKG 317
>06_02_0244 - 13445023-13445400,13445495-13446823
Length = 568
Score = 29.9 bits (64), Expect = 0.97
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 319 LVLQAETAIDNGIFPERIYQGSSGSYFVKNAGGVRDL 209
++ A ++NG P +GS G YF+++A G +++
Sbjct: 254 MISSAIAGLENGYLPVMSAEGSGGVYFMQDASGEKNI 290
>04_04_1523 - 34148407-34150224
Length = 605
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 319 LVLQAETAIDNGIFPERIYQGSSGSYFVKNAGGVR 215
LV TAI +G+ P I G GSY+ +N G R
Sbjct: 137 LVDDVVTAIRSGVDPVPIGSGLGGSYYFRNISGDR 171
>09_04_0500 - 18120287-18122233
Length = 648
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 331 QFSELVLQAETAIDNGIFPERIYQGSSGSYFVKNAGGVR 215
+ +L AI NG+ P + G G+Y+ KN G R
Sbjct: 133 RMKQLAKDVVEAIRNGVDPVPVNSGMGGAYYFKNIYGER 171
>04_04_0982 - 29914146-29914187,29914839-29915168
Length = 123
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 252 LDPWYILSGKMPLSMA--VSACSTSSLNWGS 338
+DPWYI PL +A S S+S++N GS
Sbjct: 1 MDPWYIRKSIAPLLLAKHSSRTSSSAVNGGS 31
>01_06_0654 + 30911416-30912071,30913664-30914348
Length = 446
Score = 27.5 bits (58), Expect = 5.2
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +1
Query: 103 YRSTIVFDNRTITVCKLIVTINYSRISTTRGPQVFINPSPRP 228
YR +VFD+ T C V I S IST RG Q I+P+ P
Sbjct: 330 YRLELVFDSGP-TECA--VPIAESSISTKRGGQFVIDPATFP 368
>01_07_0224 - 42121011-42122486
Length = 491
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 378 VQCI*IW*PRFSVMTPSSASWYYRRRRPLITASSRR 271
V C+ ++ PRF V+TP+ ++ + P +T S R
Sbjct: 34 VLCVLLYAPRFIVLTPTYGLDFFPQPPPNVTTSPAR 69
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 26.6 bits (56), Expect = 9.1
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 195 TTSIYKSLTPPAF-FTKY-DPLDPWYILSGKMP-LSMAVSACSTSSLNWGSSH*NGVTI 362
+TS++ + + PAF T + P + SG P + S STS+ N+GSS G TI
Sbjct: 279 STSVFGASSAPAFGSTGFGSSTTPGFGSSGSTPGFGASSSGMSTSAFNFGSSPSFGQTI 337
>08_01_0690 -
6106689-6106988,6107278-6107391,6107528-6107596,
6107754-6107858,6108412-6108522,6108957-6109199
Length = 313
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 192 GTTSIYKSLTPPAFFTKYDPLDPWYILSGKMPLSMAVSACSTSSLNWGSS 341
G++ K LTPP + + LD W + +P S + A + L+W SS
Sbjct: 260 GSSDDSKFLTPPQW-REGSMLDSWKQVDETIPESDGLDAINQRRLSWPSS 308
>04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748
Length = 373
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 186 YPGTTSIYKSLTPPAFFTKYDPLDPWYILS 275
+P T+ + L PP Y PL PW ILS
Sbjct: 210 FPNTS--WGVLVPPMDEDDYSPLSPWTILS 237
>02_04_0446 - 22995503-22995655,22995775-22995912
Length = 96
Score = 26.6 bits (56), Expect = 9.1
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +1
Query: 292 QWPSPPVVPA 321
QWPSPP++PA
Sbjct: 10 QWPSPPLIPA 19
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,760,340
Number of Sequences: 37544
Number of extensions: 250551
Number of successful extensions: 640
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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